4KPNA

Plant nucleoside hydrolase - ppnrh1 enzyme
Total Genus 98

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
318
structure length
318
Chain Sequence
PPKKVIIDTDPGIDDAMAIFFALKSPELDVIALTTIYGNVRTPTATVNALHLLEFAGREDIPVSEGFRTSLRGELKERIADFVHGADGLGNTYPTLSDRKPIDTFAPDYLIQKVNEFPGEITIVALGPLTNLAAAVECDPTFAKKVGQIIILGGAFQVNGNVNPAAEANIYGDPEAADIIFTCGADILVVGINITHQVYWTGKDLEDLGRSDSKFGKYLYAASHFYATYHREAYDIDAIYLHDPATMVAAVDPSLMTYATGAVRVQKDGICKGLTLFNNSNKVWHDPTDWCGIPPVKVAVTVDRERVASLLKERLTAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (18-24)S11 (311-317)AH1 (28-39)S2 (43-50)AH2 (57-71)TI1 (40-43)TI3 (85-88)TIV5 (96-99)EMPTYTIV1 (52-55)TIV2 (53-56)S7 (214-216)TI5 (100-103)TIV6 (102-105)TIV7 (103-106)AH3 (121-131)TIV10 (170-173)TI2 (73-76)TIV4 (91-94)O1 (109-111)TIV8 (104-107)AH4 (144-153)S4 (136-140)AH7 (189-198)AH5 (156-160)S5 (163-167)TIV11 (175-178)TIV12 (176-179)AH6 (183-187)TI6 (178-181)TIV14 (294-297)TIV15 (299-302)AH10 (229-249)S6 (202-205)AH8 (207-211)AH9 (217-225)TVIII1 (211-214)AH11 (257-266)S8 (253-255)TI10 (303-306)S10 (289-293)TI7 (267-270)S9 (271-281)TIV13 (283-286)TII3 (305-308)TII2 (286-289)TIV3 (82-85)O2 (116-118)TII1 (132-135)Updating...
connected with : NaN
publication title Structure and Function of Nucleoside Hydrolases from Physcomitrella patens and Maize Catalyzing the Hydrolysis of Purine, Pyrimidine, and Cytokinin Ribosides.
pubmed doi rcsb
molecule keywords Nucleoside N-ribohydrolase 1
molecule tags Hydrolase
source organism Physcomitrella patens
total genus 98
structure length 318
sequence length 318
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2013-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 4kpnA00
3FZ0A 5TSQA 1MASA 2YHGA 1YOEA 2C40A 3MKMA 3MKNA 4I74A 4KL0A 3EPWA 4I72A 4I73A 1EZRA 3EPXA 3G5IA 4P5FA 3T8JA 2MASA 1KICA 3T8IA 4KPNA 1R4FA 1HOZA 4I75A 1HP0A 4WR2A 1KIEA 3B9XA 4I70A 2FF1A 2FF2A 1Q8FA 4KPOA 4I71A 3B9GA
chains in the Genus database with same CATH superfamily
3FZ0A 5TSQA 1MASA 2YHGA 1YOEA 2C40A 3MKMA 3MKNA 4I74A 4KL0A 3EPWA 4I72A 4I73A 1EZRA 3EPXA 3G5IA 4P5FA 3T8JA 2MASA 1KICA 3T8IA 4KPNA 1R4FA 1HOZA 4I75A 1HP0A 4WR2A 1KIEA 3B9XA 4I70A 2FF1A 2FF2A 1Q8FA 4KPOA 4I71A 3B9GA
chains in the Genus database with same CATH topology
3FZ0A 5TSQA 1MASA 2YHGA 1YOEA 2C40A 3MKMA 3MKNA 4I74A 4KL0A 3EPWA 4I72A 4I73A 1EZRA 3EPXA 3G5IA 4P5FA 3T8JA 2MASA 1KICA 3T8IA 4KPNA 1R4FA 1HOZA 4I75A 1HP0A 4WR2A 1KIEA 3B9XA 4I70A 2FF1A 2FF2A 1Q8FA 4KPOA 4I71A 3B9GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FZ0 A;  5TSQ A;  1MAS A;  2YHG A;  1YOE A;  2C40 A;  3MKM A;  3MKN A;  4I74 A;  4KL0 A;  3EPW A;  4I72 A;  4I73 A;  1EZR A;  3EPX A;  3G5I A;  4P5F A;  3T8J A;  2MAS A;  1KIC A;  3T8I A;  4KPN A;  1R4F A;  1HOZ A;  4I75 A;  1HP0 A;  4WR2 A;  1KIE A;  3B9X A;  4I70 A;  2FF1 A;  2FF2 A;  1Q8F A;  4KPO A;  4I71 A;  3B9G A; 
#chains in the Genus database with same CATH topology
 3FZ0 A;  5TSQ A;  1MAS A;  2YHG A;  1YOE A;  2C40 A;  3MKM A;  3MKN A;  4I74 A;  4KL0 A;  3EPW A;  4I72 A;  4I73 A;  1EZR A;  3EPX A;  3G5I A;  4P5F A;  3T8J A;  2MAS A;  1KIC A;  3T8I A;  4KPN A;  1R4F A;  1HOZ A;  4I75 A;  1HP0 A;  4WR2 A;  1KIE A;  3B9X A;  4I70 A;  2FF1 A;  2FF2 A;  1Q8F A;  4KPO A;  4I71 A;  3B9G A; 
#chains in the Genus database with same CATH homology
 3FZ0 A;  5TSQ A;  1MAS A;  2YHG A;  1YOE A;  2C40 A;  3MKM A;  3MKN A;  4I74 A;  4KL0 A;  3EPW A;  4I72 A;  4I73 A;  1EZR A;  3EPX A;  3G5I A;  4P5F A;  3T8J A;  2MAS A;  1KIC A;  3T8I A;  4KPN A;  1R4F A;  1HOZ A;  4I75 A;  1HP0 A;  4WR2 A;  1KIE A;  3B9X A;  4I70 A;  2FF1 A;  2FF2 A;  1Q8F A;  4KPO A;  4I71 A;  3B9G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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