4KPNA

Plant nucleoside hydrolase - ppnrh1 enzyme
Total Genus 98

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
318
structure length
318
Chain Sequence
PPKKVIIDTDPGIDDAMAIFFALKSPELDVIALTTIYGNVRTPTATVNALHLLEFAGREDIPVSEGFRTSLRGELKERIADFVHGADGLGNTYPTLSDRKPIDTFAPDYLIQKVNEFPGEITIVALGPLTNLAAAVECDPTFAKKVGQIIILGGAFQVNGNVNPAAEANIYGDPEAADIIFTCGADILVVGINITHQVYWTGKDLEDLGRSDSKFGKYLYAASHFYATYHREAYDIDAIYLHDPATMVAAVDPSLMTYATGAVRVQKDGICKGLTLFNNSNKVWHDPTDWCGIPPVKVAVTVDRERVASLLKERLTAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (18-24)S11 (311-317)AH1 (28-39)S2 (43-50)AH2 (57-71)TI1 (40-43)TI3 (85-88)TIV5 (96-99)EMPTYTIV1 (52-55)TIV2 (53-56)S7 (214-216)TI5 (100-103)TIV6 (102-105)TIV7 (103-106)AH3 (121-131)TIV10 (170-173)TI2 (73-76)TIV4 (91-94)O1 (109-111)TIV8 (104-107)AH4 (144-153)S4 (136-140)AH7 (189-198)AH5 (156-160)S5 (163-167)TIV11 (175-178)TIV12 (176-179)AH6 (183-187)TI6 (178-181)TIV14 (294-297)TIV15 (299-302)AH10 (229-249)S6 (202-205)AH8 (207-211)AH9 (217-225)TVIII1 (211-214)AH11 (257-266)S8 (253-255)TI10 (303-306)S10 (289-293)TI7 (267-270)S9 (271-281)TIV13 (283-286)TII3 (305-308)TII2 (286-289)TIV3 (82-85)O2 (116-118)TII1 (132-135)Updating...
connected with : NaN
publication title Structure and Function of Nucleoside Hydrolases from Physcomitrella patens and Maize Catalyzing the Hydrolysis of Purine, Pyrimidine, and Cytokinin Ribosides.
pubmed doi rcsb
molecule keywords Nucleoside N-ribohydrolase 1
molecule tags Hydrolase
source organism Physcomitrella patens
total genus 98
structure length 318
sequence length 318
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2013-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 4kpnA00
3B9XA 1HP0A 4I70A 1KIEA 2FF2A 4KPNA 3MKMA 1YOEA 3FZ0A 4KPOA 1R4FA 3B9GA 1Q8FA 4I73A 3T8JA 1KICA 2C40A 2FF1A 4I75A 3T8IA 2YHGA 3MKNA 1HOZA 1MASA 2MASA 3G5IA 4I72A 4KL0A 4P5FA 1EZRA 4WR2A 3EPWA 4I74A 4I71A 5TSQA 3EPXA
chains in the Genus database with same CATH superfamily
3B9XA 1HP0A 4I70A 1KIEA 2FF2A 4KPNA 3MKMA 1YOEA 3FZ0A 4KPOA 1R4FA 3B9GA 1Q8FA 4I73A 3T8JA 1KICA 2C40A 2FF1A 4I75A 3T8IA 2YHGA 3MKNA 1HOZA 1MASA 2MASA 3G5IA 4I72A 4KL0A 4P5FA 1EZRA 4WR2A 3EPWA 4I74A 4I71A 5TSQA 3EPXA
chains in the Genus database with same CATH topology
3B9XA 1HP0A 4I70A 1KIEA 2FF2A 4KPNA 3MKMA 1YOEA 3FZ0A 4KPOA 1R4FA 3B9GA 1Q8FA 4I73A 3T8JA 1KICA 2C40A 2FF1A 4I75A 3T8IA 2YHGA 3MKNA 1HOZA 1MASA 2MASA 3G5IA 4I72A 4KL0A 4P5FA 1EZRA 4WR2A 3EPWA 4I74A 4I71A 5TSQA 3EPXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B9X A;  1HP0 A;  4I70 A;  1KIE A;  2FF2 A;  4KPN A;  3MKM A;  1YOE A;  3FZ0 A;  4KPO A;  1R4F A;  3B9G A;  1Q8F A;  4I73 A;  3T8J A;  1KIC A;  2C40 A;  2FF1 A;  4I75 A;  3T8I A;  2YHG A;  3MKN A;  1HOZ A;  1MAS A;  2MAS A;  3G5I A;  4I72 A;  4KL0 A;  4P5F A;  1EZR A;  4WR2 A;  3EPW A;  4I74 A;  4I71 A;  5TSQ A;  3EPX A; 
#chains in the Genus database with same CATH topology
 3B9X A;  1HP0 A;  4I70 A;  1KIE A;  2FF2 A;  4KPN A;  3MKM A;  1YOE A;  3FZ0 A;  4KPO A;  1R4F A;  3B9G A;  1Q8F A;  4I73 A;  3T8J A;  1KIC A;  2C40 A;  2FF1 A;  4I75 A;  3T8I A;  2YHG A;  3MKN A;  1HOZ A;  1MAS A;  2MAS A;  3G5I A;  4I72 A;  4KL0 A;  4P5F A;  1EZR A;  4WR2 A;  3EPW A;  4I74 A;  4I71 A;  5TSQ A;  3EPX A; 
#chains in the Genus database with same CATH homology
 3B9X A;  1HP0 A;  4I70 A;  1KIE A;  2FF2 A;  4KPN A;  3MKM A;  1YOE A;  3FZ0 A;  4KPO A;  1R4F A;  3B9G A;  1Q8F A;  4I73 A;  3T8J A;  1KIC A;  2C40 A;  2FF1 A;  4I75 A;  3T8I A;  2YHG A;  3MKN A;  1HOZ A;  1MAS A;  2MAS A;  3G5I A;  4I72 A;  4KL0 A;  4P5F A;  1EZR A;  4WR2 A;  3EPW A;  4I74 A;  4I71 A;  5TSQ A;  3EPX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.