4KPO | Genus

Total Genus 94

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	94
sequence length	317
structure length	317
Chain Sequence	PNSKIIIDTDPGIDDSVAILMAFQMPGVQVLGLTTIFGNCTTEHATRNALILCEKASHLEVPVAEGSHEPLKGGKPHVADFVHGPDGLGNVDLPDPTIKKVEESATDFLVDKVSRFPGEVSVLALGPLTNIALAIKKDPSFVKNVKKIVVLGGAFFAAGNATPSAEANIHSDPEAADMVFTSGADIYVVGLNITTQVSFTDKDLLELRNSQGKYAQFLCDVCKFYLDWHTESYGAPVIFLHDPVSFAALVRPELFTFKKGVVRVETQGICVGHTSMDMLLKKWNSENPWTGYSPISVAWTVDVPKVVAFVKELVTKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 317 atoms

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317 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure and Function of Nucleoside Hydrolases from Physcomitrella patens and Maize Catalyzing the Hydrolysis of Purine, Pyrimidine, and Cytokinin Ribosides. pubmed doi rcsb
molecule keywords	Nucleoside N-ribohydrolase 3
molecule tags	Hydrolase
source organism	Zea mays
total genus	94
structure length	317
sequence length	317
chains with identical sequence	B
ec nomenclature	ec 3.2.2.-:
pdb deposition date	2013-05-14

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.245.10	Alpha Beta	Alpha-Beta Complex	Inosine-uridine Nucleoside N-ribohydrolase; Chain A	Ribonucleoside hydrolase-like	4kpoA00

3EPWA 4I73A 3FZ0A 4I72A 1KIEA 4KL0A 3T8JA 3EPXA 1KICA 3B9XA 2MASA 2FF1A 1MASA 4P5FA 4KPOA 3MKMA 5TSQA 3T8IA 1Q8FA 4KPNA 1EZRA 2FF2A 2YHGA 3MKNA 4I75A 4WR2A 1HOZA 4I74A 3B9GA 3G5IA 4I70A 4I71A 1HP0A 2C40A 1YOEA 1R4FA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A; 
#chains in the Genus database with same CATH topology
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A; 
#chains in the Genus database with same CATH homology
 3EPW A;  4I73 A;  3FZ0 A;  4I72 A;  1KIE A;  4KL0 A;  3T8J A;  3EPX A;  1KIC A;  3B9X A;  2MAS A;  2FF1 A;  1MAS A;  4P5F A;  4KPO A;  3MKM A;  5TSQ A;  3T8I A;  1Q8F A;  4KPN A;  1EZR A;  2FF2 A;  2YHG A;  3MKN A;  4I75 A;  4WR2 A;  1HOZ A;  4I74 A;  3B9G A;  3G5I A;  4I70 A;  4I71 A;  1HP0 A;  2C40 A;  1YOE A;  1R4F A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4KPOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN