The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
136
|
sequence length |
508
|
structure length |
505
|
Chain Sequence |
LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLNVAAMLERAGDDAARPEWLEPEFGVDGLYYLEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITAN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Direct control of type IIA topoisomerase activity by a chromosomally encoded regulatory protein.
pubmed doi rcsb |
| molecule tags |
Isomerase/isomerase inhibitor
|
| source organism |
Escherichia coli
|
| molecule keywords |
DNA gyrase subunit A
|
| total genus |
136
|
| structure length |
505
|
| sequence length |
508
|
| chains with identical sequence |
C, E, G
|
| ec nomenclature |
ec
5.99.1.3: Transferred entry: 5.6.2.3. |
| pdb deposition date | 2014-05-31 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Topoisomerase; domain 3 | Topoisomerase, domain 3 | ||
| Alpha Beta | Alpha-Beta Complex | Topoisomerase II; domain 5 | Topoisomerase II, domain 5 |
#chains in the Genus database with same CATH superfamily 1BJT A; 2XCO A; 4TMA A; 3QX3 A; 1X75 A; 4CKL A; 4G0U A; 3FOF A; 4DDQ A; 4Z3O A; 2Y3P A; 3L4J A; 1BGW A; 4CKK A; 3LPX A; 3L4K A; 4ELY A; 1ZVU A; 4Z4Q A; 4FM9 A; 4G0V A; 3NUH A; 2RGR A; 2XCQ A; 4ELZ A; 4J3N A; 4Z53 A; 3FOE A; 1AB4 A; 4G0W A; 2XCR B; #chains in the Genus database with same CATH topology 1BJT A; 2XCO A; 4TMA A; 3QX3 A; 1X75 A; 4CKL A; 4G0U A; 3FOF A; 4DDQ A; 4Z3O A; 2Y3P A; 3L4J A; 1BGW A; 4CKK A; 3LPX A; 3L4K A; 4ELY A; 1ZVU A; 4Z4Q A; 4FM9 A; 4G0V A; 3NUH A; 2RGR A; 2XCQ A; 4ELZ A; 4J3N A; 2QPT A; 4Z53 A; 4CID A; 3FOE A; 1AB4 A; 4G0W A; 2XCR B; #chains in the Genus database with same CATH homology 1BJT A; 2XCO A; 4TMA A; 3QX3 A; 1X75 A; 4CKL A; 4G0U A; 3FOF A; 4DDQ A; 4Z3O A; 2Y3P A; 3L4J A; 1BGW A; 4CKK A; 3LPX A; 3L4K A; 4ELY A; 1ZVU A; 4Z4Q A; 4FM9 A; 4G0V A; 3NUH A; 2RGR A; 2XCQ A; 4ELZ A; 4J3N A; 4Z53 A; 3FOE A; 1AB4 A; 4G0W A; 2XCR B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
