4WR2 | Genus

Total Genus 89

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	318
structure length	308
Chain Sequence	KAIRPLASATPIILDCDPGHDDAISLILALSSERLNPLAVTTSAGNQTPDKTLNNALRILTLLNRADMPVAGGAVKPLARELIIAGPKLPDPSFDPLTQNAIELMAEKVRQSAVPVTLVPSGPLTNIALFIANYPELHSKVERIVLMGGAAGVGNWTPAAEFNIFVDPEAADMVFKSGIPITMCGLDVTHEAQIMDEDIERIRAIPNPVAQCVAELLDFFMIYHRDPKWGFTGAPLHDPCTIAWLLKPELFTAQECWVGVETKGEYTQGMTVVDRYQLTGKTANATVLFDLDRQGFVDLIVDCLSAYN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of a putative pyrimidine-specific ribonucleoside hydrolase (RihA) Protein from Shewanella loihica PV-4 (SHEW_0697, Target PSI-029635) with divalent cation and PEG 400 bound at the active site rcsb
molecule keywords	Pyrimidine-specific ribonucleoside hydrolase RihA
molecule tags	Hydrolase
source organism	Shewanella loihica
total genus	89
structure length	308
sequence length	318
ec nomenclature	ec 3.2.-.-:
pdb deposition date	2014-10-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01156	IU_nuc_hydro	Inosine-uridine preferring nucleoside hydrolase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.245.10	Alpha Beta	Alpha-Beta Complex	Inosine-uridine Nucleoside N-ribohydrolase; Chain A	Ribonucleoside hydrolase-like	4wr2A00

4I75A 3B9XA 3T8IA 4P5FA 3G5IA 4I71A 3EPWA 1KICA 2YHGA 3FZ0A 1MASA 1YOEA 2MASA 4I70A 1KIEA 2C40A 4WR2A 1Q8FA 2FF1A 4KPNA 3B9GA 2FF2A 4I74A 1HOZA 3EPXA 1EZRA 3T8JA 3MKNA 5TSQA 4I73A 1R4FA 4I72A 3MKMA 1HP0A 4KL0A 4KPOA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4I75 A;  3B9X A;  3T8I A;  4P5F A;  3G5I A;  4I71 A;  3EPW A;  1KIC A;  2YHG A;  3FZ0 A;  1MAS A;  1YOE A;  2MAS A;  4I70 A;  1KIE A;  2C40 A;  4WR2 A;  1Q8F A;  2FF1 A;  4KPN A;  3B9G A;  2FF2 A;  4I74 A;  1HOZ A;  3EPX A;  1EZR A;  3T8J A;  3MKN A;  5TSQ A;  4I73 A;  1R4F A;  4I72 A;  3MKM A;  1HP0 A;  4KL0 A;  4KPO A; 
#chains in the Genus database with same CATH topology
 4I75 A;  3B9X A;  3T8I A;  4P5F A;  3G5I A;  4I71 A;  3EPW A;  1KIC A;  2YHG A;  3FZ0 A;  1MAS A;  1YOE A;  2MAS A;  4I70 A;  1KIE A;  2C40 A;  4WR2 A;  1Q8F A;  2FF1 A;  4KPN A;  3B9G A;  2FF2 A;  4I74 A;  1HOZ A;  3EPX A;  1EZR A;  3T8J A;  3MKN A;  5TSQ A;  4I73 A;  1R4F A;  4I72 A;  3MKM A;  1HP0 A;  4KL0 A;  4KPO A; 
#chains in the Genus database with same CATH homology
 4I75 A;  3B9X A;  3T8I A;  4P5F A;  3G5I A;  4I71 A;  3EPW A;  1KIC A;  2YHG A;  3FZ0 A;  1MAS A;  1YOE A;  2MAS A;  4I70 A;  1KIE A;  2C40 A;  4WR2 A;  1Q8F A;  2FF1 A;  4KPN A;  3B9G A;  2FF2 A;  4I74 A;  1HOZ A;  3EPX A;  1EZR A;  3T8J A;  3MKN A;  5TSQ A;  4I73 A;  1R4F A;  4I72 A;  3MKM A;  1HP0 A;  4KL0 A;  4KPO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4WR2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations