4WR2A

Crystal structure of a putative pyrimidine-specific ribonucleoside hydrolase (riha) protein from shewanella loihica pv-4 (shew_0697, target psi-029635) with divalent cation and peg 400 bound at the active site
Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
318
structure length
308
Chain Sequence
KAIRPLASATPIILDCDPGHDDAISLILALSSERLNPLAVTTSAGNQTPDKTLNNALRILTLLNRADMPVAGGAVKPLARELIIAGPKLPDPSFDPLTQNAIELMAEKVRQSAVPVTLVPSGPLTNIALFIANYPELHSKVERIVLMGGAAGVGNWTPAAEFNIFVDPEAADMVFKSGIPITMCGLDVTHEAQIMDEDIERIRAIPNPVAQCVAELLDFFMIYHRDPKWGFTGAPLHDPCTIAWLLKPELFTAQECWVGVETKGEYTQGMTVVDRYQLTGKTANATVLFDLDRQGFVDLIVDCLSAYN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (45-48)AH1 (59-69)S1 (49-55)S2 (74-81)TVIII1 (161-164)S4 (165-169)AH9 (257-268)AH2 (88-102)AH3 (155-160)TI3 (116-119)TI5 (150-153)TIV2 (151-155)3H4 (276-278)AH4 (173-182)3H1 (184-189)S6 (230-231)3H2 (221-225)S5 (190-194)TIV3 (199-202)S9 (300-305)TIV4 (203-206)TIV5 (204-207)AH5 (211-215)AH6 (217-220)AH7 (235-239)TIV6 (239-242)S7 (242-243)S8 (283-284)AH8 (245-253)O1 (254-256)3H3 (269-272)TIV7 (280-283)3H5 (297-299)TI2 (71-74)TI4 (149-152)TI6 (206-209)AH10 (287-295)S3 (109-111)Updating...
connected with : NaN
publication title Crystal structure of a putative pyrimidine-specific ribonucleoside hydrolase (RihA) Protein from Shewanella loihica PV-4 (SHEW_0697, Target PSI-029635) with divalent cation and PEG 400 bound at the active site
rcsb
molecule keywords Pyrimidine-specific ribonucleoside hydrolase RihA
molecule tags Hydrolase
source organism Shewanella loihica
total genus 89
structure length 308
sequence length 318
ec nomenclature ec 3.2.-.-:
pdb deposition date 2014-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 4wr2A00
3EPXA 4P5FA 1HOZA 3FZ0A 2FF2A 2MASA 4I70A 3EPWA 3MKNA 2C40A 1YOEA 4I72A 1MASA 4KL0A 4I71A 3B9XA 1KIEA 4I73A 1Q8FA 3MKMA 1HP0A 3T8IA 4KPOA 4WR2A 3G5IA 5TSQA 4I74A 4KPNA 1EZRA 4I75A 1KICA 2FF1A 2YHGA 1R4FA 3B9GA 3T8JA
chains in the Genus database with same CATH superfamily
3EPXA 4P5FA 1HOZA 3FZ0A 2FF2A 2MASA 4I70A 3EPWA 3MKNA 2C40A 1YOEA 4I72A 1MASA 4KL0A 4I71A 3B9XA 1KIEA 4I73A 1Q8FA 3MKMA 1HP0A 3T8IA 4KPOA 4WR2A 3G5IA 5TSQA 4I74A 4KPNA 1EZRA 4I75A 1KICA 2FF1A 2YHGA 1R4FA 3B9GA 3T8JA
chains in the Genus database with same CATH topology
3EPXA 4P5FA 1HOZA 3FZ0A 2FF2A 2MASA 4I70A 3EPWA 3MKNA 2C40A 1YOEA 4I72A 1MASA 4KL0A 4I71A 3B9XA 1KIEA 4I73A 1Q8FA 3MKMA 1HP0A 3T8IA 4KPOA 4WR2A 3G5IA 5TSQA 4I74A 4KPNA 1EZRA 4I75A 1KICA 2FF1A 2YHGA 1R4FA 3B9GA 3T8JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EPX A;  4P5F A;  1HOZ A;  3FZ0 A;  2FF2 A;  2MAS A;  4I70 A;  3EPW A;  3MKN A;  2C40 A;  1YOE A;  4I72 A;  1MAS A;  4KL0 A;  4I71 A;  3B9X A;  1KIE A;  4I73 A;  1Q8F A;  3MKM A;  1HP0 A;  3T8I A;  4KPO A;  4WR2 A;  3G5I A;  5TSQ A;  4I74 A;  4KPN A;  1EZR A;  4I75 A;  1KIC A;  2FF1 A;  2YHG A;  1R4F A;  3B9G A;  3T8J A; 
#chains in the Genus database with same CATH topology
 3EPX A;  4P5F A;  1HOZ A;  3FZ0 A;  2FF2 A;  2MAS A;  4I70 A;  3EPW A;  3MKN A;  2C40 A;  1YOE A;  4I72 A;  1MAS A;  4KL0 A;  4I71 A;  3B9X A;  1KIE A;  4I73 A;  1Q8F A;  3MKM A;  1HP0 A;  3T8I A;  4KPO A;  4WR2 A;  3G5I A;  5TSQ A;  4I74 A;  4KPN A;  1EZR A;  4I75 A;  1KIC A;  2FF1 A;  2YHG A;  1R4F A;  3B9G A;  3T8J A; 
#chains in the Genus database with same CATH homology
 3EPX A;  4P5F A;  1HOZ A;  3FZ0 A;  2FF2 A;  2MAS A;  4I70 A;  3EPW A;  3MKN A;  2C40 A;  1YOE A;  4I72 A;  1MAS A;  4KL0 A;  4I71 A;  3B9X A;  1KIE A;  4I73 A;  1Q8F A;  3MKM A;  1HP0 A;  3T8I A;  4KPO A;  4WR2 A;  3G5I A;  5TSQ A;  4I74 A;  4KPN A;  1EZR A;  4I75 A;  1KIC A;  2FF1 A;  2YHG A;  1R4F A;  3B9G A;  3T8J A; 
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similar chains in the pdb database (?% sequence similarity)

 
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