5FLXI

Mammalian 40s hcv-ires complex
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
207
structure length
207
Chain Sequence
GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
pubmed doi rcsb
molecule tags Ribosome
source organism Hepatitis c virus
molecule keywords 18S RRNA
total genus 30
structure length 207
sequence length 207
ec nomenclature
pdb deposition date 2015-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF01201 Ribosomal_S8e Ribosomal protein S8e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.168.20 Mainly Alpha Orthogonal Bundle Phosducin; domain 2 Phosducin; domain 2 5flxI03
3J81I 5FLXI 5LL6V 5IT9I 3J80I 3JAMI 5A2QI
chains in the Genus database with same CATH superfamily
1A0RP 3J81I 1B9YC 5FLXI 5LL6V 5IT9I 1B9XC 2TRCP 3J80I 3JAMI 5A2QI
chains in the Genus database with same CATH topology
3J81I 5FLXI 5LL6V 5IT9I 3J80I 3JAMI 5A2QI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3J81 I;  5FLX I;  5LL6 V;  5IT9 I;  3J80 I;  3JAM I;  5A2Q I; 
#chains in the Genus database with same CATH topology
 1A0R P;  3J81 I;  1B9Y C;  5FLX I;  5LL6 V;  5IT9 I;  1B9X C;  2TRC P;  3J80 I;  3JAM I;  5A2Q I; 
#chains in the Genus database with same CATH homology
 3J81 I;  5FLX I;  5LL6 V;  5IT9 I;  3J80 I;  3JAM I;  5A2Q I; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...