5JW8A

Crystal structure of the type iv pilin subunit pile from neisseria meningitidis
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
ARAQVSEAILLAEGQKSAVTEYYLNHGEWPGDNSSAGVATSADIKGKYVQSVTVANGVITAQMASSNVNNEIKSKKLSLWAKRQNGSVKWFCGQPVTRTTATATDVAAANGKTDDKINTKHLPSTCRDDSSAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Neisseria meningitidis Type IV pilus.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Neisseria meningitidis serogroup c
molecule keywords Major pilin PilE
total genus 31
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2016-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 5jw8A00
3JYZA 3FU1A 1AY2A 2PILA 1HPWA 1X6XX 3G20A 1DZOA 1OQWA 4LW9A 3GN9A 1X6QA 1X6PA 2HI2A 3JZZA 5JW8A 3SOJA 1T92A 1RG0A 1X6RA 4V1JA 1X6ZA 2M7GA 3SOKA 2KEPA 1X6YA 2PY0A 1QVEA
chains in the Genus database with same CATH superfamily
3JYZA 3FU1A 1AY2A 2PILA 1HPWA 1X6XX 3U9SA 3G20A 1DZOA 1OQWA 3U9TA 4LW9A 1ZQ7A 3GN9A 1VAJA 1X6QA 3N6RA 1WSCA 1X6PA 2HI2A 3JZZA 5JW8A 3SOJA 1T92A 1RG0A 1X6RA 4V1JA 1X6ZA 2M7GA 3SOKA 2KEPA 1X6YA 2PY0A 1QVEA 2M3KA
chains in the Genus database with same CATH topology
3JYZA 3FU1A 1AY2A 2PILA 1HPWA 1X6XX 3U9SA 3G20A 1DZOA 1OQWA 3U9TA 4LW9A 3GN9A 1X6QA 3N6RA 1X6PA 2HI2A 3JZZA 5JW8A 3SOJA 1T92A 1RG0A 1X6RA 4V1JA 1X6ZA 2M7GA 3SOKA 2KEPA 1X6YA 2PY0A 1QVEA 2M3KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JYZ A;  3FU1 A;  1AY2 A;  2PIL A;  1HPW A;  1X6X X;  3G20 A;  1DZO A;  1OQW A;  4LW9 A;  3GN9 A;  1X6Q A;  1X6P A;  2HI2 A;  3JZZ A;  5JW8 A;  3SOJ A;  1T92 A;  1RG0 A;  1X6R A;  4V1J A;  1X6Z A;  2M7G A;  3SOK A;  2KEP A;  1X6Y A;  2PY0 A;  1QVE A; 
#chains in the Genus database with same CATH topology
 3JYZ A;  3FU1 A;  1AY2 A;  2PIL A;  1HPW A;  1X6X X;  3U9S A;  3G20 A;  1DZO A;  1OQW A;  3U9T A;  4LW9 A;  1ZQ7 A;  3GN9 A;  1VAJ A;  1X6Q A;  3N6R A;  1WSC A;  1X6P A;  2HI2 A;  3JZZ A;  5JW8 A;  3SOJ A;  1T92 A;  1RG0 A;  1X6R A;  4V1J A;  1X6Z A;  2M7G A;  3SOK A;  2KEP A;  1X6Y A;  2PY0 A;  1QVE A;  2M3K A; 
#chains in the Genus database with same CATH homology
 3JYZ A;  3FU1 A;  1AY2 A;  2PIL A;  1HPW A;  1X6X X;  3U9S A;  3G20 A;  1DZO A;  1OQW A;  3U9T A;  4LW9 A;  3GN9 A;  1X6Q A;  3N6R A;  1X6P A;  2HI2 A;  3JZZ A;  5JW8 A;  3SOJ A;  1T92 A;  1RG0 A;  1X6R A;  4V1J A;  1X6Z A;  2M7G A;  3SOK A;  2KEP A;  1X6Y A;  2PY0 A;  1QVE A;  2M3K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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