5TSQA

Crystal structure of iunh from leishmania braziliensis in complex with d-ribose
Total Genus 113

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
312
structure length
312
Chain Sequence
PRKIILDCDPGIDDAVAILLAYGNPEIELLAITTVVGNQTLEKVTRNAQLVADVAGIVGVPIAAGCCKPLVRKVRTAPQIHGETGLGTVSYPSEFKTKLDKRHAVHLIIELIMSHEPKSITLVPTGGLTNIAMAARLEPRIVERVKEVVLMGGSCCIGNASPVAEFNIFVDPEAAHIVFNESWDVTMVGLDLTSQALATPEVLQRVKEVRTKPADFILKILEFYTKVYETQRNTYAKVHDPCAVAYVIDPTVMTTNRVPVNIELNGELTAGMTVTDFRYPRPEQCHTQVASKLDFSKYWDLVIDALQRIGDP
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (25-28)S2 (28-35)AH4 (105-115)S1 (3-9)AH5 (129-138)AH1 (13-24)TIV1 (37-40)AH12 (240-249)S4 (121-125)TIV3 (58-61)AH2 (42-56)AH3 (79-82)TIV2 (38-41)TVIII1 (93-96)S3 (63-65)AH7 (167-171)TI2 (70-73)AH8 (173-181)S8 (261-264)AH11 (213-233)TIV4 (85-88)TI3 (83-86)AH6 (141-145)S5 (148-152)TI4 (162-165)TIV5 (155-158)AH9 (191-195)TIV6 (159-162)TIV7 (160-163)S10 (288-294)TIV8 (195-198)AH10 (201-210)AH13 (296-310)3H1 (251-253)S7 (254-258)S9 (273-276)TI6 (268-271)TII2 (270-273)TI5 (267-270)TIV9 (264-267)TIV10 (279-282)TVIII2 (96-99)TII1 (117-120)S6 (186-189)TIV11 (283-286)Updating...
connected with : NaN
publication title Crystal structure of IUnH from Leishmania braziliensis in complex with D-Ribose
rcsb
molecule keywords IUnH
molecule tags Hydrolase
source organism Leishmania braziliensis braziliensis
total genus 113
structure length 312
sequence length 312
ec nomenclature ec 3.2.2.1: Purine nucleosidase.
pdb deposition date 2016-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase; Chain A Ribonucleoside hydrolase-like 5tsqA00
3T8JA 3B9GA 3EPXA 1Q8FA 2YHGA 2FF2A 3MKMA 2MASA 1EZRA 3T8IA 1MASA 2FF1A 4I74A 4KPOA 3MKNA 4P5FA 5TSQA 2C40A 1R4FA 1KIEA 1YOEA 4KL0A 4I73A 3G5IA 1HOZA 3B9XA 4KPNA 1HP0A 3EPWA 3FZ0A 4I71A 1KICA 4I70A 4I75A 4WR2A 4I72A
chains in the Genus database with same CATH superfamily
3T8JA 3B9GA 3EPXA 1Q8FA 2YHGA 2FF2A 3MKMA 2MASA 1EZRA 3T8IA 1MASA 2FF1A 4I74A 4KPOA 3MKNA 4P5FA 5TSQA 2C40A 1R4FA 1KIEA 1YOEA 4KL0A 4I73A 3G5IA 1HOZA 3B9XA 4KPNA 1HP0A 3EPWA 3FZ0A 4I71A 1KICA 4I70A 4I75A 4WR2A 4I72A
chains in the Genus database with same CATH topology
3T8JA 3B9GA 3EPXA 1Q8FA 2YHGA 2FF2A 3MKMA 2MASA 1EZRA 3T8IA 1MASA 2FF1A 4I74A 4KPOA 3MKNA 4P5FA 5TSQA 2C40A 1R4FA 1KIEA 1YOEA 4KL0A 4I73A 3G5IA 1HOZA 3B9XA 4KPNA 1HP0A 3EPWA 3FZ0A 4I71A 1KICA 4I70A 4I75A 4WR2A 4I72A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T8J A;  3B9G A;  3EPX A;  1Q8F A;  2YHG A;  2FF2 A;  3MKM A;  2MAS A;  1EZR A;  3T8I A;  1MAS A;  2FF1 A;  4I74 A;  4KPO A;  3MKN A;  4P5F A;  5TSQ A;  2C40 A;  1R4F A;  1KIE A;  1YOE A;  4KL0 A;  4I73 A;  3G5I A;  1HOZ A;  3B9X A;  4KPN A;  1HP0 A;  3EPW A;  3FZ0 A;  4I71 A;  1KIC A;  4I70 A;  4I75 A;  4WR2 A;  4I72 A; 
#chains in the Genus database with same CATH topology
 3T8J A;  3B9G A;  3EPX A;  1Q8F A;  2YHG A;  2FF2 A;  3MKM A;  2MAS A;  1EZR A;  3T8I A;  1MAS A;  2FF1 A;  4I74 A;  4KPO A;  3MKN A;  4P5F A;  5TSQ A;  2C40 A;  1R4F A;  1KIE A;  1YOE A;  4KL0 A;  4I73 A;  3G5I A;  1HOZ A;  3B9X A;  4KPN A;  1HP0 A;  3EPW A;  3FZ0 A;  4I71 A;  1KIC A;  4I70 A;  4I75 A;  4WR2 A;  4I72 A; 
#chains in the Genus database with same CATH homology
 3T8J A;  3B9G A;  3EPX A;  1Q8F A;  2YHG A;  2FF2 A;  3MKM A;  2MAS A;  1EZR A;  3T8I A;  1MAS A;  2FF1 A;  4I74 A;  4KPO A;  3MKN A;  4P5F A;  5TSQ A;  2C40 A;  1R4F A;  1KIE A;  1YOE A;  4KL0 A;  4I73 A;  3G5I A;  1HOZ A;  3B9X A;  4KPN A;  1HP0 A;  3EPW A;  3FZ0 A;  4I71 A;  1KIC A;  4I70 A;  4I75 A;  4WR2 A;  4I72 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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