1B7EA

Transposase inhibitor
Total Genus 100
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
402
structure length
372
Chain Sequence
SAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMPDNLERMVSILSFVAVRLLQLRESFTLPQALRAQGLLKEAEHVESQSAETVLTPDECQLLGYLDKGKRKRKEKGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEIN (TRANSPOSASE INHIBITOR PROTEIN FROM TN5)
publication title The three-dimensional structure of a Tn5 transposase-related protein determined to 2.9A resolution.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase inhibitor
total genus 100
structure length 372
sequence length 402
ec nomenclature
pdb deposition date 1999-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1b7eA02
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1b7eA01
1B7EA 1MUSA 3ECPA 1MUHA 4DM0A 1MM8A
chains in the Genus database with same CATH superfamily
1B7EA 1MUSA 3ECPA 1MUHA 4DM0A 1MM8A
chains in the Genus database with same CATH topology
1B7EA 1MUSA 3ECPA 1MUHA 4DM0A 1MM8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B7E A;  1MUS A;  3ECP A;  1MUH A;  4DM0 A;  1MM8 A; 
#chains in the Genus database with same CATH topology
 1B7E A;  1MUS A;  3ECP A;  1MUH A;  4DM0 A;  1MM8 A; 
#chains in the Genus database with same CATH homology
 1B7E A;  1MUS A;  3ECP A;  1MUH A;  4DM0 A;  1MM8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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