1MUHA

Crystal structure of tn5 transposase complexed with transposon end dna
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
473
structure length
455
Chain Sequence
ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA TRANSFERRED STRAND
publication title Three-dimensional structure of the Tn5 synaptic complex transposition intermediate.
pubmed doi rcsb
source organism Escherichia coli
total genus 159
structure length 455
sequence length 473
ec nomenclature
pdb deposition date 2002-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 1muhA01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1muhA03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1muhA02
4DM0A 1MUHA 1B7EA 3ECPA 1MUSA 1MM8A
chains in the Genus database with same CATH superfamily
2OT3A 3NVIA 2XMOA 2VUFA 2XSIA 3V09A 1KDXA 1GNJA 1E7EA 2EFCA 4N3ZA 3FNMA 3NVMA 3B9MA 4GDXA 1BM0A 1HK2A 3JRYA 2BXBA 3ICXA 3LU8A 4G03A 4DHXB 2I2ZA 1HK5A 2E0YA 4FIPB 1SB0A 5GIPA 4G01A 2AJEA 5BPKA 1VFIA 2LXSA 3JQZA 4LB9A 1E7FA 1E7CA 3BPJA 2CKXA 4FK5B 1J7EA 4DM0A 4BKEA 1MA9A 3KJLA 4S1YA 3FWBC 2BXIA 3WHSA 2BXGA 3H37A 3MHHB 1E7AA 2EFEA 2BXCA 5ID9A 1E7HA 3H3AA 2BXKA 4FJCB 1IJGA 2Z8IA 4J2VA 1LNSA 2LOQA 2XVWA 2DG5A 3B9LA 4OR0A 4WA6B 4IW2A 4OTTA 1O9XA 1TXUA 1GNIA 3FWCC 1E7IA 4F5UA 3WHQA 4ZBRA 4Z9OA 4LB2A 4G04A 3V03A 1KW2A 2DYMA 2Z8JA 3SQJA 4PO0A 4I9OA 3V08A 4GDLB 5IFOA 4JK4A 2LQHA 1E7GA 2BXFA 1MUHA 4L9QA 1TF0A 1BJ5A 5GHKA 1HK3A 4ZCGA 1AO6A 2BXNA 2DBUA 4M70B 4L8UA 1H5WA 5D7GA 3VQIA 5IJEA 4NAWB 5GIOA 1KXPD 4N0UD 1E78A 3SIVB 2AGHB 5IIHA 3A73A 3W1SA 2ROHA 3UIVA 4D7XA 5HOZA 5GINA 4BY9C 1HK4A 4MBEC 2EFDA 3GQXA 1LOTA 1B7EA 4F5VA 3ECPA 4ZBKA 3A75A 2K0NA 1MM8A 5IJFA 4W4UB 2YDFA 2XVUA 3WHRA 2DYOA 3G9KD 2BXPA 1H9ZA 2KBZA 3KIKA 4TQ0A 2XVQA 4HGKA 4GDKB 1MIVA 2BXQA 4OT2A 2BXEA 2BXDA 3MHSB 2BXLA 5DBYA 3SIUB 2BX8A 1UORA 2BXHA 2GUTA 3M99C 4ZUXV 4N0FD 2E0XA 4EMXA 2NNWA 3NVKA 1VZSA 5DQFA 2JUHA 5B5TA 1MUSA 4F5SA 2BXOA 2QM6A 2EFHA 2QMCA 4F5TA 4Z69A 3PLAA 2KWFA 1N5UA 4LUFA 4ZC6A 1FOUA 1J78A 4TQ1A 3TDLA 2OZBB 5IJ5A 4ZBQA 5IIXA 2BXAA 2VDBA 3NMUA 1MIYA 4LA0A 2I30A 3LU6A 2V36A 2XW0A 3CX9A 1HA2A 3LU7A 1E7BA 5FUOA 1JNBA 2VUEA 4E99A 4L9KA 4K2CA 2BXMA 2DBWA 2DBXA 2NQOA 5ID7A 4C31B 4OTUA 5IIUA 1NT2B 2QHBA 2LQIA 3GQUA 4GG2A 4LUHA 2Z8KA 2LXTA 1BKEA 2XVVA 3GA9L 4K71A 1MIWA 2XW1A 4IW1A 4HGMB 1HK1A
chains in the Genus database with same CATH topology
4DM0A 1MUHA 1B7EA 3ECPA 1MUSA 1MM8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DM0 A;  1MUH A;  1B7E A;  3ECP A;  1MUS A;  1MM8 A; 
#chains in the Genus database with same CATH topology
 2OT3 A;  3NVI A;  2XMO A;  2VUF A;  2XSI A;  3V09 A;  1KDX A;  1GNJ A;  1E7E A;  2EFC A;  4N3Z A;  3FNM A;  3NVM A;  3B9M A;  4GDX A;  1BM0 A;  1HK2 A;  3JRY A;  2BXB A;  3ICX A;  3LU8 A;  4G03 A;  4DHX B;  2I2Z A;  1HK5 A;  2E0Y A;  4FIP B;  1SB0 A;  5GIP A;  4G01 A;  2AJE A;  5BPK A;  1VFI A;  2LXS A;  3JQZ A;  4LB9 A;  1E7F A;  1E7C A;  3BPJ A;  2CKX A;  4FK5 B;  1J7E A;  4DM0 A;  4BKE A;  1MA9 A;  3KJL A;  4S1Y A;  3FWB C;  2BXI A;  3WHS A;  2BXG A;  3H37 A;  3MHH B;  1E7A A;  2EFE A;  2BXC A;  5ID9 A;  1E7H A;  3H3A A;  2BXK A;  4FJC B;  1IJG A;  2Z8I A;  4J2V A;  1LNS A;  2LOQ A;  2XVW A;  2DG5 A;  3B9L A;  4OR0 A;  4WA6 B;  4IW2 A;  4OTT A;  1O9X A;  1TXU A;  1GNI A;  3FWC C;  1E7I A;  4F5U A;  3WHQ A;  4ZBR A;  4Z9O A;  4LB2 A;  4G04 A;  3V03 A;  1KW2 A;  2DYM A;  2Z8J A;  3SQJ A;  4PO0 A;  4I9O A;  3V08 A;  4GDL B;  5IFO A;  4JK4 A;  2LQH A;  1E7G A;  2BXF A;  1MUH A;  4L9Q A;  1TF0 A;  1BJ5 A;  5GHK A;  1HK3 A;  4ZCG A;  1AO6 A;  2BXN A;  2DBU A;  4M70 B;  4L8U A;  1H5W A;  5D7G A;  3VQI A;  5IJE A;  4NAW B;  5GIO A;  1KXP D;  4N0U D;  1E78 A;  3SIV B;  2AGH B;  5IIH A;  3A73 A;  3W1S A;  2ROH A;  3UIV A;  4D7X A;  5HOZ A;  5GIN A;  4BY9 C;  1HK4 A;  4MBE C;  2EFD A;  3GQX A;  1LOT A;  1B7E A;  4F5V A;  3ECP A;  4ZBK A;  3A75 A;  2K0N A;  1MM8 A;  5IJF A;  4W4U B;  2YDF A;  2XVU A;  3WHR A;  2DYO A;  3G9K D;  2BXP A;  1H9Z A;  2KBZ A;  3KIK A;  4TQ0 A;  2XVQ A;  4HGK A;  4GDK B;  1MIV A;  2BXQ A;  4OT2 A;  2BXE A;  2BXD A;  3MHS B;  2BXL A;  5DBY A;  3SIU B;  2BX8 A;  1UOR A;  2BXH A;  2GUT A;  3M99 C;  4ZUX V;  4N0F D;  2E0X A;  4EMX A;  2NNW A;  3NVK A;  1VZS A;  5DQF A;  2JUH A;  5B5T A;  1MUS A;  4F5S A;  2BXO A;  2QM6 A;  2EFH A;  2QMC A;  4F5T A;  4Z69 A;  3PLA A;  2KWF A;  1N5U A;  4LUF A;  4ZC6 A;  1FOU A;  1J78 A;  4TQ1 A;  3TDL A;  2OZB B;  5IJ5 A;  4ZBQ A;  5IIX A;  2BXA A;  2VDB A;  3NMU A;  1MIY A;  4LA0 A;  2I30 A;  3LU6 A;  2V36 A;  2XW0 A;  3CX9 A;  1HA2 A;  3LU7 A;  1E7B A;  5FUO A;  1JNB A;  2VUE A;  4E99 A;  4L9K A;  4K2C A;  2BXM A;  2DBW A;  2DBX A;  2NQO A;  5ID7 A;  4C31 B;  4OTU A;  5IIU A;  1NT2 B;  2QHB A;  2LQI A;  3GQU A;  4GG2 A;  4LUH A;  2Z8K A;  2LXT A;  1BKE A;  2XVV A;  3GA9 L;  4K71 A;  1MIW A;  2XW1 A;  4IW1 A;  4HGM B;  1HK1 A; 
#chains in the Genus database with same CATH homology
 4DM0 A;  1MUH A;  1B7E A;  3ECP A;  1MUS A;  1MM8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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