1C5E | Genus

Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	95
structure length	95
Chain Sequence	SDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 95 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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95 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Enterobacteria phage lambda
publication title	Novel fold and capsid-binding properties of the lambda-phage display platform protein gpD. pubmed doi rcsb
molecule keywords	HEAD DECORATION PROTEIN
total genus	15
structure length	95
sequence length	95
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	1999-11-18

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.300.10	Mainly Beta	Beta Barrel	Virus Head Decoration Protein; Chain: A,	Head decoration protein D	1c5eA00

3GQHA 3GQKA 1C5EA 3SUCA 1TD4A 1TCZA 1TD0A 1VD0A 1TD3A
chains in the Genus database with same CATH superfamily

3GQHA 3GQKA 1C5EA 3SUCA 1TD4A 1TCZA 1TD0A 1VD0A 1TD3A
chains in the Genus database with same CATH topology

3GQHA 3GQKA 1C5EA 3SUCA 1TD4A 1TCZA 1TD0A 1VD0A 1TD3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3GQH A;  3GQK A;  1C5E A;  3SUC A;  1TD4 A;  1TCZ A;  1TD0 A;  1VD0 A;  1TD3 A; 
#chains in the Genus database with same CATH topology
 3GQH A;  3GQK A;  1C5E A;  3SUC A;  1TD4 A;  1TCZ A;  1TD0 A;  1VD0 A;  1TD3 A; 
#chains in the Genus database with same CATH homology
 3GQH A;  3GQK A;  1C5E A;  3SUC A;  1TD4 A;  1TCZ A;  1TD0 A;  1VD0 A;  1TD3 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1C5EA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN