1TCZA

Crystal structure of a truncated version of the phage lamda protein gpd
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
95
structure length
95
Chain Sequence
SDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Head decoration protein
publication title Crystal structure of a truncated version of the phage lambda protein gpD.
pubmed doi rcsb
source organism Enterobacteria phage lambda
total genus 15
structure length 95
sequence length 95
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2004-05-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein; Chain: A, Head decoration protein D 1tczA00
3GQKA 1TD0A 1TCZA 1TD4A 3GQHA 1TD3A 1C5EA 3SUCA 1VD0A
chains in the Genus database with same CATH superfamily
3GQKA 1TD0A 1TCZA 1TD4A 3GQHA 1TD3A 1C5EA 3SUCA 1VD0A
chains in the Genus database with same CATH topology
3GQKA 1TD0A 1TCZA 1TD4A 3GQHA 1TD3A 1C5EA 3SUCA 1VD0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GQK A;  1TD0 A;  1TCZ A;  1TD4 A;  3GQH A;  1TD3 A;  1C5E A;  3SUC A;  1VD0 A; 
#chains in the Genus database with same CATH topology
 3GQK A;  1TD0 A;  1TCZ A;  1TD4 A;  3GQH A;  1TD3 A;  1C5E A;  3SUC A;  1VD0 A; 
#chains in the Genus database with same CATH homology
 3GQK A;  1TD0 A;  1TCZ A;  1TD4 A;  3GQH A;  1TD3 A;  1C5E A;  3SUC A;  1VD0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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