1TCZA

Crystal structure of a truncated version of the phage lamda protein gpd
Total Genus 15
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
95
structure length
95
Chain Sequence
b'SDPAHTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKRTAFAGTAISIV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Head decoration protein
publication title Crystal structure of a truncated version of the phage lambda protein gpD.
pubmed doi rcsb
source organism Enterobacteria phage lambda
molecule tags Viral protein
total genus 15
structure length 95
sequence length 95
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2004-05-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein; Chain: A, Head decoration protein D 1tczA00
1VD0A 1TCZA 1TD0A 3GQKA 1C5EA 3GQHA 1TD4A 3SUCA 1TD3A
chains in the Genus database with same CATH superfamily
1VD0A 1TCZA 1TD0A 3GQKA 1C5EA 3GQHA 1TD4A 3SUCA 1TD3A
chains in the Genus database with same CATH topology
1VD0A 1TCZA 1TD0A 3GQKA 1C5EA 3GQHA 1TD4A 3SUCA 1TD3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VD0 A;  1TCZ A;  1TD0 A;  3GQK A;  1C5E A;  3GQH A;  1TD4 A;  3SUC A;  1TD3 A; 
#chains in the Genus database with same CATH topology
 1VD0 A;  1TCZ A;  1TD0 A;  3GQK A;  1C5E A;  3GQH A;  1TD4 A;  3SUC A;  1TD3 A; 
#chains in the Genus database with same CATH homology
 1VD0 A;  1TCZ A;  1TD0 A;  3GQK A;  1C5E A;  3GQH A;  1TD4 A;  3SUC A;  1TD3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...