1DUJA

Solution structure of the spindle assembly checkpoint protein human mad2
Total Genus 40
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
187
structure length
187
Chain Sequence
GSITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Cell cycle
molecule keywords SPINDLE ASSEMBLY CHECKPOINT PROTEIN
publication title Structure of the Mad2 spindle assembly checkpoint protein and its interaction with Cdc20.
pubmed doi rcsb
source organism Homo sapiens
total genus 40
structure length 187
sequence length 187
ec nomenclature
pdb deposition date 2000-01-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.900.10 Alpha Beta 2-Layer Sandwich Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A HORMA domain 1dujA00
4AEZB 3ABEC 4YK8B 4TZSA 5LCWZ 1S2HA 3ABDA 1KLQA 2QYFA 3GMHA 4GK5A 4GK0A 2VFXA 4FJOC 4TZLA 5C50B 4TZQA 2V64A 1DUJA 3VU7C 4TZJA 4TZMA 4TRKA 4TZOA 4EXTC 1GO4A 4J2GA 2V64D 4TZNA
chains in the Genus database with same CATH superfamily
4AEZB 3ABEC 4YK8B 4TZSA 5LCWZ 1S2HA 3ABDA 1KLQA 2QYFA 3GMHA 2QYFB 4GK5A 4GK0A 2VFXA 4FJOC 4TZLA 5C50B 4TZQA 2V64A 1DUJA 3VU7C 4TZJA 4TZMA 4TRKA 4TZOA 4EXTC 1GO4A 4J2GA 2V64D 4TZNA
chains in the Genus database with same CATH topology
4AEZB 3ABEC 4YK8B 4TZSA 5LCWZ 1S2HA 3ABDA 1KLQA 2QYFA 3GMHA 4GK5A 4GK0A 2VFXA 4FJOC 4TZLA 5C50B 4TZQA 2V64A 1DUJA 3VU7C 4TZJA 4TZMA 4TRKA 4TZOA 4EXTC 1GO4A 4J2GA 2V64D 4TZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AEZ B;  3ABE C;  4YK8 B;  4TZS A;  5LCW Z;  1S2H A;  3ABD A;  1KLQ A;  2QYF A;  3GMH A;  4GK5 A;  4GK0 A;  2VFX A;  4FJO C;  4TZL A;  5C50 B;  4TZQ A;  2V64 A;  1DUJ A;  3VU7 C;  4TZJ A;  4TZM A;  4TRK A;  4TZO A;  4EXT C;  1GO4 A;  4J2G A;  2V64 D;  4TZN A; 
#chains in the Genus database with same CATH topology
 4AEZ B;  3ABE C;  4YK8 B;  4TZS A;  5LCW Z;  1S2H A;  3ABD A;  1KLQ A;  2QYF A;  3GMH A;  2QYF B;  4GK5 A;  4GK0 A;  2VFX A;  4FJO C;  4TZL A;  5C50 B;  4TZQ A;  2V64 A;  1DUJ A;  3VU7 C;  4TZJ A;  4TZM A;  4TRK A;  4TZO A;  4EXT C;  1GO4 A;  4J2G A;  2V64 D;  4TZN A; 
#chains in the Genus database with same CATH homology
 4AEZ B;  3ABE C;  4YK8 B;  4TZS A;  5LCW Z;  1S2H A;  3ABD A;  1KLQ A;  2QYF A;  3GMH A;  4GK5 A;  4GK0 A;  2VFX A;  4FJO C;  4TZL A;  5C50 B;  4TZQ A;  2V64 A;  1DUJ A;  3VU7 C;  4TZJ A;  4TZM A;  4TRK A;  4TZO A;  4EXT C;  1GO4 A;  4J2G A;  2V64 D;  4TZN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...