1ECM | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	91
structure length	91
Chain Sequence	NPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 91 atoms

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91 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	ATOMIC-STRUCTURE OF THE BURIED CATALYTIC POCKET OF ESCHERICHIA-COLI CHORISMATE MUTASE. pubmed rcsb
molecule keywords	ENDO-OXABICYCLIC TRANSITION STATE ANALOGUE
molecule tags	Chorismate mutase
source organism	Escherichia coli
total genus	40
structure length	91
sequence length	91
chains with identical sequence	B
ec nomenclature	ec 4.2.1.51: Prephenate dehydratase.
pdb deposition date	1994-11-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01817	CM_2	Chorismate mutase type II

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.59.10	Mainly Alpha	Up-down Bundle	Chorismate Mutase Domain, subunit A	Chorismate mutase	1ecmA00

1YBZA 2VKLA 3HGXA 3RETA 2W1AC 2H9DA 2QBVA 5CKXC 3NVTA 2H9CA 2D8EA 2W19C 3REMA 3HGWA 1ECMA 3TFCA 2GTVX 2D8DA 3RMIA
chains in the Genus database with same CATH superfamily

1YBZA 2VKLA 3HGXA 2E21A 2W1AC 3RETA 2H9DA 2QBVA 5CKXC 3NVTA 2H9CA 2D8EA 1NI5A 2W19C 3REMA 3HGWA 1ECMA 3TFCA 2GTVX 2E89A 2D8DA 1WY5A 3A2KA 3RMIA
chains in the Genus database with same CATH topology

1YBZA 2VKLA 3HGXA 3RETA 2W1AC 2H9DA 2QBVA 5CKXC 3NVTA 2H9CA 2D8EA 2W19C 3REMA 3HGWA 1ECMA 3TFCA 2GTVX 2D8DA 3RMIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1YBZ A;  2VKL A;  3HGX A;  3RET A;  2W1A C;  2H9D A;  2QBV A;  5CKX C;  3NVT A;  2H9C A;  2D8E A;  2W19 C;  3REM A;  3HGW A;  1ECM A;  3TFC A;  2GTV X;  2D8D A;  3RMI A; 
#chains in the Genus database with same CATH topology
 1YBZ A;  2VKL A;  3HGX A;  2E21 A;  2W1A C;  3RET A;  2H9D A;  2QBV A;  5CKX C;  3NVT A;  2H9C A;  2D8E A;  1NI5 A;  2W19 C;  3REM A;  3HGW A;  1ECM A;  3TFC A;  2GTV X;  2E89 A;  2D8D A;  1WY5 A;  3A2K A;  3RMI A; 
#chains in the Genus database with same CATH homology
 1YBZ A;  2VKL A;  3HGX A;  3RET A;  2W1A C;  2H9D A;  2QBV A;  5CKX C;  3NVT A;  2H9C A;  2D8E A;  2W19 C;  3REM A;  3HGW A;  1ECM A;  3TFC A;  2GTV X;  2D8D A;  3RMI A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
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1ECMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations