1JH0 | Genus

Total Genus 98

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	98
sequence length	280
structure length	280
Chain Sequence	ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKLMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGIN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Individual interactions influence the crystalline order for membrane proteins. pubmed doi rcsb
molecule keywords	Photosynthetic Reaction Center L subunit
molecule tags	Photosynthesis
source organism	Rhodobacter sphaeroides
total genus	98
structure length	280
sequence length	280
ec nomenclature
pdb deposition date	2001-06-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
L	PF00124	Photo_RC	Photosynthetic reaction centre protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M; domain 1	Photosystem II protein D1-like	1jh0L01
1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M; domain 1	Photosystem II protein D1-like	1jh0L02

5PRCL 1OGVM 4N7KM 2JJ0L 4IN6L 1AIJL 1FNQM 1DV3L 2UWVM 3V3ZM 1FNPM 2UX3M 4RCRM 2PRCL 1RVJL 1L9BM 2UWSL 3ZUWL 2UWTM 2GNUM 2UXJM 1F6NL 2UX4L 4H99M 1K6NL 1RY5M 2X5VL 5LSEM 1JGZM 1S00M 1MPSL 1QOVL 2RCRM 2UXML 2X5UL 3G7FL 1RZZL 1JGYM 3WMMM 1PRCL 1K6LM 2WX5M 4TQQM 1JH0L 2UWWM 1AIGM 3DTSM 2BNSB 3DTRM 4IN5M 6PRCM 5LRIM 2HJ6M 2JIYL 2UX5L 1RQKL 4CASB 4HBHL 1DS8M 1E6DM 1OGVL 1YF6M 4LWYM 4N7KL 1PCRM 3DUQL 2UXLM 2UWUM 3DU2M 1EYSM 2UWVL 1L9JL 2WJNM 2WJML 2HHKL 1JGXM 2J8CL 3DSYM 4H9LL 1PSTL 2GNUL 1YSTL 1JGWL 1UMXM 1PSSM 4N7LM 2I5NM 1RGNM 2HG9M 1KBYM 2JBLL 3D38M 5LSEL 1JGZL 2RCRL 3WMML 3T6DM 2HG3L 1JGYL 1DXRM 2WX5L 2UWWL 3DTSL 1DV6M 5LRIL 4IN7L 3DU3L 6PRCL 2HITL 2HJ6L 3DTAM 3I4DL 3V3YL 1E14L 2BOZM 1R2CL 3T6EL 1RG5L 3PRCM 4HBJM 4LWYL 2UXKM 2UXLL 1M3XM 2UWUL 1EYSL 2JJ0M 2BNPB 1FNQL 2BNPA 4IN6M 1AIJM 3V3ZL 1DV3M 1FNPL 3DSYL 1RZHM 2UX3L 4RCRL 2PRCM 1L9BL 1RVJM 2UWTL 4N7LL 3D38L 2UXKL 2UXJL 2UX4M 4H99L 1RY5L 1S00L 1VRNM 2UXMM 1MPSM 1DV6L 1QOVM 3ZUMM 1K6LL 2J8DM 4TQQL 4HBJL 7PRCM 1AIGL 1JH0M 4IN5L 3DTRL 4CASC 2GMRM 2UX5M 1M3XL 1RQKM 1DS8L 1E6DL 1YF6L 4HBHM 1PCRL 2HH1M 3DU2L 3DUQM 5PRCM 2WJNL 1L9JM 1RZHL 2WJMM 1JGXL 2HHKM 2J8CM 4H9LM 1PSTM 1YSTM 1UMXL 1PSSL 1JGWM 2I5NL 1RGNL 2HG9L 1KBYL 2JBLM 2UWSM 3ZUWM 1F6NM 1VRNL 3T6DL 2HG3M 1K6NM 1DXRL 3ZUML 2J8DL 2X5VM 2X5UM 7PRCL 3G7FM 1RZZM 2GMRL 4IN7M 3DU3M 3DTAL 1PRCM 2BNSA 2HITM 3I4DM 3V3YM 2BOZL 1E14M 1R2CM 3PRCL 3T6EM 1RG5M 2HH1L 2JIYM
chains in the Genus database with same CATH superfamily

5PRCL 1OGVM 3WRXC 4N7KM 2JJ0L 4IN6L 1AIJL 1FNQM 1DV3L 2UWVM 3V3ZM 1FNPM 2UX3M 4RCRM 2PRCL 1RVJL 1L9BM 2UWSL 3ZUWL 2UWTM 2GNUM 2UXJM 1F6NL 2UX4L 4H99M 1K6NL 1RY5M 2X5VL 5LSEM 1JGZM 1S00M 1MPSL 1QOVL 2RCRM 2UXML 2X5UL 3G7FL 1RZZL 1JGYM 3WMMM 1PRCL 1K6LM 2WX5M 4TQQM 1JH0L 2UWWM 1AIGM 3DTSM 2BNSB 3DTRM 4IN5M 6PRCM 5LRIM 2HJ6M 2JIYL 2UX5L 1RQKL 4CASB 4HBHL 1DS8M 1E6DM 1OGVL 1YF6M 4LWYM 4N7KL 1PCRM 3DUQL 2UXLM 2UWUM 3DU2M 3VKWA 1EYSM 2UWVL 1L9JL 2WJNM 2WJML 2HHKL 1JGXM 2J8CL 3DSYM 4H9LL 1PSTL 2GNUL 3WRYC 1YSTL 1JGWL 1UMXM 1PSSM 4N7LM 2I5NM 1RGNM 2HG9M 1KBYM 2JBLL 3D38M 5LSEL 1JGZL 2RCRL 3WMML 3T6DM 2HG3L 1JGYL 1DXRM 2WX5L 2UWWL 3DTSL 1DV6M 5LRIL 4IN7L 3DU3L 6PRCL 2HITL 2HJ6L 3DTAM 3I4DL 3V3YL 1E14L 2BOZM 1R2CL 3T6EL 1RG5L 3PRCM 4HBJM 4LWYL 2UXKM 2UXLL 1M3XM 2UWUL 1EYSL 2JJ0M 2BNPB 1FNQL 2BNPA 4IN6M 1AIJM 3V3ZL 1DV3M 1FNPL 3DSYL 1RZHM 2UX3L 4RCRL 2PRCM 1L9BL 1RVJM 2UWTL 4N7LL 3D38L 2UXKL 2UXJL 2UX4M 4H99L 1RY5L 1S00L 1VRNM 2UXMM 1MPSM 1DV6L 1QOVM 3ZUMM 1K6LL 2J8DM 4TQQL 4HBJL 7PRCM 1AIGL 1JH0M 4IN5L 3DTRL 4CASC 2GMRM 2UX5M 1M3XL 1RQKM 1DS8L 1E6DL 1YF6L 4HBHM 1PCRL 2HH1M 3DU2L 3DUQM 5PRCM 2WJNL 1L9JM 1RZHL 2WJMM 1JGXL 2HHKM 2J8CM 4H9LM 1PSTM 1YSTM 1UMXL 1PSSL 1JGWM 2I5NL 1RGNL 2HG9L 1KBYL 2JBLM 2UWSM 3ZUWM 1F6NM 1VRNL 3T6DL 2HG3M 1K6NM 1DXRL 3ZUML 2J8DL 2X5VM 2X5UM 7PRCL 3G7FM 1RZZM 2GMRL 4IN7M 3DU3M 3DTAL 1PRCM 2BNSA 2HITM 3I4DM 3V3YM 2BOZL 1E14M 1R2CM 3PRCL 3T6EM 1RG5M 2HH1L 2JIYM
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5PRC L;  1OGV M;  4N7K M;  2JJ0 L;  4IN6 L;  1AIJ L;  1FNQ M;  1DV3 L;  2UWV M;  3V3Z M;  1FNP M;  2UX3 M;  4RCR M;  2PRC L;  1RVJ L;  1L9B M;  2UWS L;  3ZUW L;  2UWT M;  2GNU M;  2UXJ M;  1F6N L;  2UX4 L;  4H99 M;  1K6N L;  1RY5 M;  2X5V L;  5LSE M;  1JGZ M;  1S00 M;  1MPS L;  1QOV L;  2RCR M;  2UXM L;  2X5U L;  3G7F L;  1RZZ L;  1JGY M;  3WMM M;  1PRC L;  1K6L M;  2WX5 M;  4TQQ M;  1JH0 L;  2UWW M;  1AIG M;  3DTS M;  2BNS B;  3DTR M;  4IN5 M;  6PRC M;  5LRI M;  2HJ6 M;  2JIY L;  2UX5 L;  1RQK L;  4CAS B;  4HBH L;  1DS8 M;  1E6D M;  1OGV L;  1YF6 M;  4LWY M;  4N7K L;  1PCR M;  3DUQ L;  2UXL M;  2UWU M;  3DU2 M;  1EYS M;  2UWV L;  1L9J L;  2WJN M;  2WJM L;  2HHK L;  1JGX M;  2J8C L;  3DSY M;  4H9L L;  1PST L;  2GNU L;  1YST L;  1JGW L;  1UMX M;  1PSS M;  4N7L M;  2I5N M;  1RGN M;  2HG9 M;  1KBY M;  2JBL L;  3D38 M;  5LSE L;  1JGZ L;  2RCR L;  3WMM L;  3T6D M;  2HG3 L;  1JGY L;  1DXR M;  2WX5 L;  2UWW L;  3DTS L;  1DV6 M;  5LRI L;  4IN7 L;  3DU3 L;  6PRC L;  2HIT L;  2HJ6 L;  3DTA M;  3I4D L;  3V3Y L;  1E14 L;  2BOZ M;  1R2C L;  3T6E L;  1RG5 L;  3PRC M;  4HBJ M;  4LWY L;  2UXK M;  2UXL L;  1M3X M;  2UWU L;  1EYS L;  2JJ0 M;  2BNP B;  1FNQ L;  2BNP A;  4IN6 M;  1AIJ M;  3V3Z L;  1DV3 M;  1FNP L;  3DSY L;  1RZH M;  2UX3 L;  4RCR L;  2PRC M;  1L9B L;  1RVJ M;  2UWT L;  4N7L L;  3D38 L;  2UXK L;  2UXJ L;  2UX4 M;  4H99 L;  1RY5 L;  1S00 L;  1VRN M;  2UXM M;  1MPS M;  1DV6 L;  1QOV M;  3ZUM M;  1K6L L;  2J8D M;  4TQQ L;  4HBJ L;  7PRC M;  1AIG L;  1JH0 M;  4IN5 L;  3DTR L;  4CAS C;  2GMR M;  2UX5 M;  1M3X L;  1RQK M;  1DS8 L;  1E6D L;  1YF6 L;  4HBH M;  1PCR L;  2HH1 M;  3DU2 L;  3DUQ M;  5PRC M;  2WJN L;  1L9J M;  1RZH L;  2WJM M;  1JGX L;  2HHK M;  2J8C M;  4H9L M;  1PST M;  1YST M;  1UMX L;  1PSS L;  1JGW M;  2I5N L;  1RGN L;  2HG9 L;  1KBY L;  2JBL M;  2UWS M;  3ZUW M;  1F6N M;  1VRN L;  3T6D L;  2HG3 M;  1K6N M;  1DXR L;  3ZUM L;  2J8D L;  2X5V M;  2X5U M;  7PRC L;  3G7F M;  1RZZ M;  2GMR L;  4IN7 M;  3DU3 M;  3DTA L;  1PRC M;  2BNS A;  2HIT M;  3I4D M;  3V3Y M;  2BOZ L;  1E14 M;  1R2C M;  3PRC L;  3T6E M;  1RG5 M;  2HH1 L;  2JIY M; 
#chains in the Genus database with same CATH topology
 5PRC L;  1OGV M;  3WRX C;  4N7K M;  2JJ0 L;  4IN6 L;  1AIJ L;  1FNQ M;  1DV3 L;  2UWV M;  3V3Z M;  1FNP M;  2UX3 M;  4RCR M;  2PRC L;  1RVJ L;  1L9B M;  2UWS L;  3ZUW L;  2UWT M;  2GNU M;  2UXJ M;  1F6N L;  2UX4 L;  4H99 M;  1K6N L;  1RY5 M;  2X5V L;  5LSE M;  1JGZ M;  1S00 M;  1MPS L;  1QOV L;  2RCR M;  2UXM L;  2X5U L;  3G7F L;  1RZZ L;  1JGY M;  3WMM M;  1PRC L;  1K6L M;  2WX5 M;  4TQQ M;  1JH0 L;  2UWW M;  1AIG M;  3DTS M;  2BNS B;  3DTR M;  4IN5 M;  6PRC M;  5LRI M;  2HJ6 M;  2JIY L;  2UX5 L;  1RQK L;  4CAS B;  4HBH L;  1DS8 M;  1E6D M;  1OGV L;  1YF6 M;  4LWY M;  4N7K L;  1PCR M;  3DUQ L;  2UXL M;  2UWU M;  3DU2 M;  3VKW A;  1EYS M;  2UWV L;  1L9J L;  2WJN M;  2WJM L;  2HHK L;  1JGX M;  2J8C L;  3DSY M;  4H9L L;  1PST L;  2GNU L;  3WRY C;  1YST L;  1JGW L;  1UMX M;  1PSS M;  4N7L M;  2I5N M;  1RGN M;  2HG9 M;  1KBY M;  2JBL L;  3D38 M;  5LSE L;  1JGZ L;  2RCR L;  3WMM L;  3T6D M;  2HG3 L;  1JGY L;  1DXR M;  2WX5 L;  2UWW L;  3DTS L;  1DV6 M;  5LRI L;  4IN7 L;  3DU3 L;  6PRC L;  2HIT L;  2HJ6 L;  3DTA M;  3I4D L;  3V3Y L;  1E14 L;  2BOZ M;  1R2C L;  3T6E L;  1RG5 L;  3PRC M;  4HBJ M;  4LWY L;  2UXK M;  2UXL L;  1M3X M;  2UWU L;  1EYS L;  2JJ0 M;  2BNP B;  1FNQ L;  2BNP A;  4IN6 M;  1AIJ M;  3V3Z L;  1DV3 M;  1FNP L;  3DSY L;  1RZH M;  2UX3 L;  4RCR L;  2PRC M;  1L9B L;  1RVJ M;  2UWT L;  4N7L L;  3D38 L;  2UXK L;  2UXJ L;  2UX4 M;  4H99 L;  1RY5 L;  1S00 L;  1VRN M;  2UXM M;  1MPS M;  1DV6 L;  1QOV M;  3ZUM M;  1K6L L;  2J8D M;  4TQQ L;  4HBJ L;  7PRC M;  1AIG L;  1JH0 M;  4IN5 L;  3DTR L;  4CAS C;  2GMR M;  2UX5 M;  1M3X L;  1RQK M;  1DS8 L;  1E6D L;  1YF6 L;  4HBH M;  1PCR L;  2HH1 M;  3DU2 L;  3DUQ M;  5PRC M;  2WJN L;  1L9J M;  1RZH L;  2WJM M;  1JGX L;  2HHK M;  2J8C M;  4H9L M;  1PST M;  1YST M;  1UMX L;  1PSS L;  1JGW M;  2I5N L;  1RGN L;  2HG9 L;  1KBY L;  2JBL M;  2UWS M;  3ZUW M;  1F6N M;  1VRN L;  3T6D L;  2HG3 M;  1K6N M;  1DXR L;  3ZUM L;  2J8D L;  2X5V M;  2X5U M;  7PRC L;  3G7F M;  1RZZ M;  2GMR L;  4IN7 M;  3DU3 M;  3DTA L;  1PRC M;  2BNS A;  2HIT M;  3I4D M;  3V3Y M;  2BOZ L;  1E14 M;  1R2C M;  3PRC L;  3T6E M;  1RG5 M;  2HH1 L;  2JIY M; 
#chains in the Genus database with same CATH homology
 5PRC L;  1OGV M;  4N7K M;  2JJ0 L;  4IN6 L;  1AIJ L;  1FNQ M;  1DV3 L;  2UWV M;  3V3Z M;  1FNP M;  2UX3 M;  4RCR M;  2PRC L;  1RVJ L;  1L9B M;  2UWS L;  3ZUW L;  2UWT M;  2GNU M;  2UXJ M;  1F6N L;  2UX4 L;  4H99 M;  1K6N L;  1RY5 M;  2X5V L;  5LSE M;  1JGZ M;  1S00 M;  1MPS L;  1QOV L;  2RCR M;  2UXM L;  2X5U L;  3G7F L;  1RZZ L;  1JGY M;  3WMM M;  1PRC L;  1K6L M;  2WX5 M;  4TQQ M;  1JH0 L;  2UWW M;  1AIG M;  3DTS M;  2BNS B;  3DTR M;  4IN5 M;  6PRC M;  5LRI M;  2HJ6 M;  2JIY L;  2UX5 L;  1RQK L;  4CAS B;  4HBH L;  1DS8 M;  1E6D M;  1OGV L;  1YF6 M;  4LWY M;  4N7K L;  1PCR M;  3DUQ L;  2UXL M;  2UWU M;  3DU2 M;  1EYS M;  2UWV L;  1L9J L;  2WJN M;  2WJM L;  2HHK L;  1JGX M;  2J8C L;  3DSY M;  4H9L L;  1PST L;  2GNU L;  1YST L;  1JGW L;  1UMX M;  1PSS M;  4N7L M;  2I5N M;  1RGN M;  2HG9 M;  1KBY M;  2JBL L;  3D38 M;  5LSE L;  1JGZ L;  2RCR L;  3WMM L;  3T6D M;  2HG3 L;  1JGY L;  1DXR M;  2WX5 L;  2UWW L;  3DTS L;  1DV6 M;  5LRI L;  4IN7 L;  3DU3 L;  6PRC L;  2HIT L;  2HJ6 L;  3DTA M;  3I4D L;  3V3Y L;  1E14 L;  2BOZ M;  1R2C L;  3T6E L;  1RG5 L;  3PRC M;  4HBJ M;  4LWY L;  2UXK M;  2UXL L;  1M3X M;  2UWU L;  1EYS L;  2JJ0 M;  2BNP B;  1FNQ L;  2BNP A;  4IN6 M;  1AIJ M;  3V3Z L;  1DV3 M;  1FNP L;  3DSY L;  1RZH M;  2UX3 L;  4RCR L;  2PRC M;  1L9B L;  1RVJ M;  2UWT L;  4N7L L;  3D38 L;  2UXK L;  2UXJ L;  2UX4 M;  4H99 L;  1RY5 L;  1S00 L;  1VRN M;  2UXM M;  1MPS M;  1DV6 L;  1QOV M;  3ZUM M;  1K6L L;  2J8D M;  4TQQ L;  4HBJ L;  7PRC M;  1AIG L;  1JH0 M;  4IN5 L;  3DTR L;  4CAS C;  2GMR M;  2UX5 M;  1M3X L;  1RQK M;  1DS8 L;  1E6D L;  1YF6 L;  4HBH M;  1PCR L;  2HH1 M;  3DU2 L;  3DUQ M;  5PRC M;  2WJN L;  1L9J M;  1RZH L;  2WJM M;  1JGX L;  2HHK M;  2J8C M;  4H9L M;  1PST M;  1YST M;  1UMX L;  1PSS L;  1JGW M;  2I5N L;  1RGN L;  2HG9 L;  1KBY L;  2JBL M;  2UWS M;  3ZUW M;  1F6N M;  1VRN L;  3T6D L;  2HG3 M;  1K6N M;  1DXR L;  3ZUM L;  2J8D L;  2X5V M;  2X5U M;  7PRC L;  3G7F M;  1RZZ M;  2GMR L;  4IN7 M;  3DU3 M;  3DTA L;  1PRC M;  2BNS A;  2HIT M;  3I4D M;  3V3Y M;  2BOZ L;  1E14 M;  1R2C M;  3PRC L;  3T6E M;  1RG5 M;  2HH1 L;  2JIY M;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1JH0L

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations