1NTKI

Crystal structure of mitochondrial cytochrome bc1 in complex with antimycin a1
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
57
structure length
57
Chain Sequence
MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structural basis for the quinone reduction in the bc(1) complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc(1) with bound substrate and inhibitors at the Q(i) site
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Ubiquinol-cytochrome C reductase complex core protein I, mit
total genus 2
structure length 57
sequence length 57
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2003-01-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1ntkI00
3L70I 1SQPI 3L72I 4U3FI 3L73I 3CWBI 3H1JI 3H1II 1SQBI 1SQVI 2FYUI 3H1LI 1L0NI 3TGUI 1NTMI 3L71I 3H1HI 3L75I 1PPJI 1NU1I 1PP9I 3L74I 1NTKI 2A06I 1SQQI 1L0LI 3H1KI 1NTZI 1SQXI
chains in the Genus database with same CATH superfamily
3L70I 1SQPI 3L72I 4U3FI 3L73I 3CWBI 3H1JI 3H1II 1SQBI 1SQVI 2FYUI 3H1LI 1L0NI 3TGUI 1NTMI 3L71I 3H1HI 3L75I 1PPJI 1NU1I 1PP9I 3L74I 1NTKI 2A06I 1SQQI 1L0LI 3H1KI 1NTZI 1SQXI
chains in the Genus database with same CATH topology
3L70I 1SQPI 3L72I 4U3FI 3L73I 3CWBI 3H1JI 3H1II 1SQBI 1SQVI 2FYUI 3H1LI 1L0NI 3TGUI 1NTMI 3L71I 3H1HI 3L75I 1PPJI 1NU1I 1PP9I 3L74I 1NTKI 2A06I 1SQQI 1L0LI 3H1KI 1NTZI 1SQXI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3L70 I;  1SQP I;  3L72 I;  4U3F I;  3L73 I;  3CWB I;  3H1J I;  3H1I I;  1SQB I;  1SQV I;  2FYU I;  3H1L I;  1L0N I;  3TGU I;  1NTM I;  3L71 I;  3H1H I;  3L75 I;  1PPJ I;  1NU1 I;  1PP9 I;  3L74 I;  1NTK I;  2A06 I;  1SQQ I;  1L0L I;  3H1K I;  1NTZ I;  1SQX I; 
#chains in the Genus database with same CATH topology
 3L70 I;  1SQP I;  3L72 I;  4U3F I;  3L73 I;  3CWB I;  3H1J I;  3H1I I;  1SQB I;  1SQV I;  2FYU I;  3H1L I;  1L0N I;  3TGU I;  1NTM I;  3L71 I;  3H1H I;  3L75 I;  1PPJ I;  1NU1 I;  1PP9 I;  3L74 I;  1NTK I;  2A06 I;  1SQQ I;  1L0L I;  3H1K I;  1NTZ I;  1SQX I; 
#chains in the Genus database with same CATH homology
 3L70 I;  1SQP I;  3L72 I;  4U3F I;  3L73 I;  3CWB I;  3H1J I;  3H1I I;  1SQB I;  1SQV I;  2FYU I;  3H1L I;  1L0N I;  3TGU I;  1NTM I;  3L71 I;  3H1H I;  3L75 I;  1PPJ I;  1NU1 I;  1PP9 I;  3L74 I;  1NTK I;  2A06 I;  1SQQ I;  1L0L I;  3H1K I;  1NTZ I;  1SQX I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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