1SQBI

Crystal structure analysis of bovine bc1 with azoxystrobin
Total Genus 2
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
57
structure length
57
Chain Sequence
MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords Ubiquinol-cytochrome C reductase complex core protein I, mit
publication title Crystallographic studies of quinol oxidation site inhibitors: a modified classification of inhibitors for the cytochrome bc(1) complex
pubmed doi rcsb
total genus 2
structure length 57
sequence length 57
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2004-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF09165 Ubiq-Cytc-red_N Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1sqbI00
1SQBI 2FYUI 3L73I 2A06I 3L75I 1NU1I 3L70I 3H1II 3L74I 1PPJI 1PP9I 3H1KI 3L71I 1NTZI 3H1LI 1SQVI 1L0LI 4U3FI 1SQQI 1L0NI 1NTKI 1NTMI 1SQPI 1SQXI 3TGUI 3H1HI 3H1JI 3L72I 3CWBI
chains in the Genus database with same CATH superfamily
1SQBI 2FYUI 3L73I 2A06I 3L75I 1NU1I 3L70I 3H1II 3L74I 1PPJI 1PP9I 3H1KI 3L71I 1NTZI 3H1LI 1SQVI 1L0LI 4U3FI 1SQQI 1L0NI 1NTKI 1NTMI 1SQPI 1SQXI 3TGUI 3H1HI 3H1JI 3L72I 3CWBI
chains in the Genus database with same CATH topology
1SQBI 2FYUI 3L73I 2A06I 3L75I 1NU1I 3L70I 3H1II 3L74I 1PPJI 1PP9I 3H1KI 3L71I 1NTZI 3H1LI 1SQVI 1L0LI 4U3FI 1SQQI 1L0NI 1NTKI 1NTMI 1SQPI 1SQXI 3TGUI 3H1HI 3H1JI 3L72I 3CWBI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1SQB I;  2FYU I;  3L73 I;  2A06 I;  3L75 I;  1NU1 I;  3L70 I;  3H1I I;  3L74 I;  1PPJ I;  1PP9 I;  3H1K I;  3L71 I;  1NTZ I;  3H1L I;  1SQV I;  1L0L I;  4U3F I;  1SQQ I;  1L0N I;  1NTK I;  1NTM I;  1SQP I;  1SQX I;  3TGU I;  3H1H I;  3H1J I;  3L72 I;  3CWB I; 
#chains in the Genus database with same CATH topology
 1SQB I;  2FYU I;  3L73 I;  2A06 I;  3L75 I;  1NU1 I;  3L70 I;  3H1I I;  3L74 I;  1PPJ I;  1PP9 I;  3H1K I;  3L71 I;  1NTZ I;  3H1L I;  1SQV I;  1L0L I;  4U3F I;  1SQQ I;  1L0N I;  1NTK I;  1NTM I;  1SQP I;  1SQX I;  3TGU I;  3H1H I;  3H1J I;  3L72 I;  3CWB I; 
#chains in the Genus database with same CATH homology
 1SQB I;  2FYU I;  3L73 I;  2A06 I;  3L75 I;  1NU1 I;  3L70 I;  3H1I I;  3L74 I;  1PPJ I;  1PP9 I;  3H1K I;  3L71 I;  1NTZ I;  3H1L I;  1SQV I;  1L0L I;  4U3F I;  1SQQ I;  1L0N I;  1NTK I;  1NTM I;  1SQP I;  1SQX I;  3TGU I;  3H1H I;  3H1J I;  3L72 I;  3CWB I;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite