3H1II

Stigmatellin and antimycin bound cytochrome bc1 complex from chicken
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
46
structure length
46
Chain Sequence
XXXXXXXXXXXXXXXRPLLCRESMSGRSARRDLVAGISLNAPASVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase
molecule keywords UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MIT
publication title Electron Transfer by Domain Movement in Cytochrome Bc1
pubmed rcsb
total genus 2
structure length 46
sequence length 46
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2009-04-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 3h1iI00
1SQVI 3H1LI 4U3FI 1SQQI 2FYUI 1PPJI 3H1JI 3L72I 3CWBI 1SQPI 1SQBI 3H1HI 3L70I 3H1II 2A06I 1L0LI 1NU1I 1NTMI 1NTZI 1PP9I 3L71I 3L74I 3L73I 1L0NI 1NTKI 3H1KI 3TGUI 3L75I 1SQXI
chains in the Genus database with same CATH superfamily
1SQVI 3H1LI 4U3FI 1SQQI 2FYUI 1PPJI 3H1JI 3L72I 3CWBI 1SQPI 1SQBI 3H1HI 3L70I 3H1II 2A06I 1L0LI 1NU1I 1NTMI 1NTZI 1PP9I 3L71I 3L74I 3L73I 1L0NI 1NTKI 3H1KI 3TGUI 3L75I 1SQXI
chains in the Genus database with same CATH topology
1SQVI 3H1LI 4U3FI 1SQQI 2FYUI 1PPJI 3H1JI 3L72I 3CWBI 1SQPI 1SQBI 3H1HI 3L70I 3H1II 2A06I 1L0LI 1NU1I 1NTMI 1NTZI 1PP9I 3L71I 3L74I 3L73I 1L0NI 1NTKI 3H1KI 3TGUI 3L75I 1SQXI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1SQV I;  3H1L I;  4U3F I;  1SQQ I;  2FYU I;  1PPJ I;  3H1J I;  3L72 I;  3CWB I;  1SQP I;  1SQB I;  3H1H I;  3L70 I;  3H1I I;  2A06 I;  1L0L I;  1NU1 I;  1NTM I;  1NTZ I;  1PP9 I;  3L71 I;  3L74 I;  3L73 I;  1L0N I;  1NTK I;  3H1K I;  3TGU I;  3L75 I;  1SQX I; 
#chains in the Genus database with same CATH topology
 1SQV I;  3H1L I;  4U3F I;  1SQQ I;  2FYU I;  1PPJ I;  3H1J I;  3L72 I;  3CWB I;  1SQP I;  1SQB I;  3H1H I;  3L70 I;  3H1I I;  2A06 I;  1L0L I;  1NU1 I;  1NTM I;  1NTZ I;  1PP9 I;  3L71 I;  3L74 I;  3L73 I;  1L0N I;  1NTK I;  3H1K I;  3TGU I;  3L75 I;  1SQX I; 
#chains in the Genus database with same CATH homology
 1SQV I;  3H1L I;  4U3F I;  1SQQ I;  2FYU I;  1PPJ I;  3H1J I;  3L72 I;  3CWB I;  1SQP I;  1SQB I;  3H1H I;  3L70 I;  3H1I I;  2A06 I;  1L0L I;  1NU1 I;  1NTM I;  1NTZ I;  1PP9 I;  3L71 I;  3L74 I;  3L73 I;  1L0N I;  1NTK I;  3H1K I;  3TGU I;  3L75 I;  1SQX I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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