1NTKI

Crystal structure of mitochondrial cytochrome bc1 in complex with antimycin a1
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
57
structure length
57
Chain Sequence
MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Ubiquinol-cytochrome C reductase complex core protein I, mit
publication title Structural basis for the quinone reduction in the bc(1) complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc(1) with bound substrate and inhibitors at the Q(i) site
pubmed doi rcsb
total genus 2
structure length 57
sequence length 57
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2003-01-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1ntkI00
3H1JI 4U3FI 3L73I 2FYUI 1SQQI 1SQBI 3H1KI 3L71I 3L72I 3L70I 1SQPI 3H1HI 3L74I 1NTZI 1SQVI 1NU1I 1PP9I 2A06I 1SQXI 1L0LI 3L75I 1PPJI 3TGUI 3H1II 1NTMI 3H1LI 1NTKI 3CWBI 1L0NI
chains in the Genus database with same CATH superfamily
3H1JI 4U3FI 3L73I 2FYUI 1SQQI 1SQBI 3H1KI 3L71I 3L72I 3L70I 1SQPI 3H1HI 3L74I 1NTZI 1SQVI 1NU1I 1PP9I 2A06I 1SQXI 1L0LI 3L75I 1PPJI 3TGUI 3H1II 1NTMI 3H1LI 1NTKI 3CWBI 1L0NI
chains in the Genus database with same CATH topology
3H1JI 4U3FI 3L73I 2FYUI 1SQQI 1SQBI 3H1KI 3L71I 3L72I 3L70I 1SQPI 3H1HI 3L74I 1NTZI 1SQVI 1NU1I 1PP9I 2A06I 1SQXI 1L0LI 3L75I 1PPJI 3TGUI 3H1II 1NTMI 3H1LI 1NTKI 3CWBI 1L0NI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3H1J I;  4U3F I;  3L73 I;  2FYU I;  1SQQ I;  1SQB I;  3H1K I;  3L71 I;  3L72 I;  3L70 I;  1SQP I;  3H1H I;  3L74 I;  1NTZ I;  1SQV I;  1NU1 I;  1PP9 I;  2A06 I;  1SQX I;  1L0L I;  3L75 I;  1PPJ I;  3TGU I;  3H1I I;  1NTM I;  3H1L I;  1NTK I;  3CWB I;  1L0N I; 
#chains in the Genus database with same CATH topology
 3H1J I;  4U3F I;  3L73 I;  2FYU I;  1SQQ I;  1SQB I;  3H1K I;  3L71 I;  3L72 I;  3L70 I;  1SQP I;  3H1H I;  3L74 I;  1NTZ I;  1SQV I;  1NU1 I;  1PP9 I;  2A06 I;  1SQX I;  1L0L I;  3L75 I;  1PPJ I;  3TGU I;  3H1I I;  1NTM I;  3H1L I;  1NTK I;  3CWB I;  1L0N I; 
#chains in the Genus database with same CATH homology
 3H1J I;  4U3F I;  3L73 I;  2FYU I;  1SQQ I;  1SQB I;  3H1K I;  3L71 I;  3L72 I;  3L70 I;  1SQP I;  3H1H I;  3L74 I;  1NTZ I;  1SQV I;  1NU1 I;  1PP9 I;  2A06 I;  1SQX I;  1L0L I;  3L75 I;  1PPJ I;  3TGU I;  3H1I I;  1NTM I;  3H1L I;  1NTK I;  3CWB I;  1L0N I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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