1SQPI

Crystal structure analysis of bovine bc1 with myxothiazol
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
57
structure length
57
Chain Sequence
MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Ubiquinol-cytochrome-c reductase complex core protein I, mit
publication title Crystallographic studies of quinol oxidation site inhibitors: a modified classification of inhibitors for the cytochrome bc(1) complex.
pubmed doi rcsb
total genus 2
structure length 57
sequence length 57
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2004-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF09165 Ubiq-Cytc-red_N Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1sqpI00
2FYUI 3H1KI 3TGUI 3L73I 4U3FI 1L0NI 1SQQI 3L71I 3CWBI 3L72I 1SQBI 3H1JI 3H1II 3L70I 3L74I 1SQPI 3H1HI 3L75I 1NU1I 1PP9I 1PPJI 1SQVI 2A06I 1NTZI 3H1LI 1NTKI 1L0LI 1SQXI 1NTMI
chains in the Genus database with same CATH superfamily
2FYUI 3H1KI 3TGUI 3L73I 4U3FI 1L0NI 1SQQI 3L71I 3CWBI 3L72I 1SQBI 3H1JI 3H1II 3L70I 3L74I 1SQPI 3H1HI 3L75I 1NU1I 1PP9I 1PPJI 1SQVI 2A06I 1NTZI 3H1LI 1NTKI 1L0LI 1SQXI 1NTMI
chains in the Genus database with same CATH topology
2FYUI 3H1KI 3TGUI 3L73I 4U3FI 1L0NI 1SQQI 3L71I 3CWBI 3L72I 1SQBI 3H1JI 3H1II 3L70I 3L74I 1SQPI 3H1HI 3L75I 1NU1I 1PP9I 1PPJI 1SQVI 2A06I 1NTZI 3H1LI 1NTKI 1L0LI 1SQXI 1NTMI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2FYU I;  3H1K I;  3TGU I;  3L73 I;  4U3F I;  1L0N I;  1SQQ I;  3L71 I;  3CWB I;  3L72 I;  1SQB I;  3H1J I;  3H1I I;  3L70 I;  3L74 I;  1SQP I;  3H1H I;  3L75 I;  1NU1 I;  1PP9 I;  1PPJ I;  1SQV I;  2A06 I;  1NTZ I;  3H1L I;  1NTK I;  1L0L I;  1SQX I;  1NTM I; 
#chains in the Genus database with same CATH topology
 2FYU I;  3H1K I;  3TGU I;  3L73 I;  4U3F I;  1L0N I;  1SQQ I;  3L71 I;  3CWB I;  3L72 I;  1SQB I;  3H1J I;  3H1I I;  3L70 I;  3L74 I;  1SQP I;  3H1H I;  3L75 I;  1NU1 I;  1PP9 I;  1PPJ I;  1SQV I;  2A06 I;  1NTZ I;  3H1L I;  1NTK I;  1L0L I;  1SQX I;  1NTM I; 
#chains in the Genus database with same CATH homology
 2FYU I;  3H1K I;  3TGU I;  3L73 I;  4U3F I;  1L0N I;  1SQQ I;  3L71 I;  3CWB I;  3L72 I;  1SQB I;  3H1J I;  3H1I I;  3L70 I;  3L74 I;  1SQP I;  3H1H I;  3L75 I;  1NU1 I;  1PP9 I;  1PPJ I;  1SQV I;  2A06 I;  1NTZ I;  3H1L I;  1NTK I;  1L0L I;  1SQX I;  1NTM I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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