1SQXI

Crystal structure analysis of bovine bc1 with stigmatellin a
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
57
structure length
57
Chain Sequence
MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Ubiquinol-cytochrome-c reductase complex core protein I, mit
publication title Crystallographic studies of quinol oxidation site inhibitors: a modified classification of inhibitors for the cytochrome bc(1) complex.
pubmed doi rcsb
total genus 2
structure length 57
sequence length 57
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2004-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF09165 Ubiq-Cytc-red_N Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1sqxI00
3L74I 1SQQI 3H1KI 1SQPI 1PP9I 3L75I 3H1JI 3L71I 1SQBI 1SQXI 3L73I 3TGUI 1L0LI 2FYUI 3H1II 3CWBI 1SQVI 1NU1I 1L0NI 3L72I 2A06I 1NTKI 3H1HI 3L70I 4U3FI 3H1LI 1PPJI 1NTMI 1NTZI
chains in the Genus database with same CATH superfamily
3L74I 1SQQI 3H1KI 1SQPI 1PP9I 3L75I 3H1JI 3L71I 1SQBI 1SQXI 3L73I 3TGUI 1L0LI 2FYUI 3H1II 3CWBI 1SQVI 1NU1I 1L0NI 3L72I 2A06I 1NTKI 3H1HI 3L70I 4U3FI 3H1LI 1PPJI 1NTMI 1NTZI
chains in the Genus database with same CATH topology
3L74I 1SQQI 3H1KI 1SQPI 1PP9I 3L75I 3H1JI 3L71I 1SQBI 1SQXI 3L73I 3TGUI 1L0LI 2FYUI 3H1II 3CWBI 1SQVI 1NU1I 1L0NI 3L72I 2A06I 1NTKI 3H1HI 3L70I 4U3FI 3H1LI 1PPJI 1NTMI 1NTZI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3L74 I;  1SQQ I;  3H1K I;  1SQP I;  1PP9 I;  3L75 I;  3H1J I;  3L71 I;  1SQB I;  1SQX I;  3L73 I;  3TGU I;  1L0L I;  2FYU I;  3H1I I;  3CWB I;  1SQV I;  1NU1 I;  1L0N I;  3L72 I;  2A06 I;  1NTK I;  3H1H I;  3L70 I;  4U3F I;  3H1L I;  1PPJ I;  1NTM I;  1NTZ I; 
#chains in the Genus database with same CATH topology
 3L74 I;  1SQQ I;  3H1K I;  1SQP I;  1PP9 I;  3L75 I;  3H1J I;  3L71 I;  1SQB I;  1SQX I;  3L73 I;  3TGU I;  1L0L I;  2FYU I;  3H1I I;  3CWB I;  1SQV I;  1NU1 I;  1L0N I;  3L72 I;  2A06 I;  1NTK I;  3H1H I;  3L70 I;  4U3F I;  3H1L I;  1PPJ I;  1NTM I;  1NTZ I; 
#chains in the Genus database with same CATH homology
 3L74 I;  1SQQ I;  3H1K I;  1SQP I;  1PP9 I;  3L75 I;  3H1J I;  3L71 I;  1SQB I;  1SQX I;  3L73 I;  3TGU I;  1L0L I;  2FYU I;  3H1I I;  3CWB I;  1SQV I;  1NU1 I;  1L0N I;  3L72 I;  2A06 I;  1NTK I;  3H1H I;  3L70 I;  4U3F I;  3H1L I;  1PPJ I;  1NTM I;  1NTZ I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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