3TGUI

Cytochrome bc1 complex from chicken with pfvs-designed moa inhibitor bound
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
74
structure length
51
Chain Sequence
LSVAARSXXXXXXXXXXXXXXPLLCRESMSGRSARRDLVAGISLNAPASVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Mitochondrial ubiquinol-cytochrome-c reductase complex core
publication title Computational discovery of picomolar Q(o) site inhibitors of cytochrome bc1 complex.
pubmed doi rcsb
total genus 1
structure length 51
sequence length 74
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2011-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF09165 Ubiq-Cytc-red_N Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 3tguI00
3L72I 1L0LI 3L70I 1SQQI 3H1II 1NTKI 3TGUI 1L0NI 1NTMI 1SQVI 4U3FI 3L71I 3L75I 2FYUI 1PPJI 1PP9I 3L73I 1SQXI 3H1JI 3H1HI 3H1KI 1NU1I 1SQBI 1SQPI 3L74I 1NTZI 3H1LI 3CWBI 2A06I
chains in the Genus database with same CATH superfamily
3L72I 1L0LI 3L70I 1SQQI 3H1II 1NTKI 3TGUI 1L0NI 1NTMI 1SQVI 4U3FI 3L71I 3L75I 2FYUI 1PPJI 1PP9I 3L73I 1SQXI 3H1JI 3H1HI 3H1KI 1NU1I 1SQBI 1SQPI 3L74I 1NTZI 3H1LI 3CWBI 2A06I
chains in the Genus database with same CATH topology
3L72I 1L0LI 3L70I 1SQQI 3H1II 1NTKI 3TGUI 1L0NI 1NTMI 1SQVI 4U3FI 3L71I 3L75I 2FYUI 1PPJI 1PP9I 3L73I 1SQXI 3H1JI 3H1HI 3H1KI 1NU1I 1SQBI 1SQPI 3L74I 1NTZI 3H1LI 3CWBI 2A06I
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3L72 I;  1L0L I;  3L70 I;  1SQQ I;  3H1I I;  1NTK I;  3TGU I;  1L0N I;  1NTM I;  1SQV I;  4U3F I;  3L71 I;  3L75 I;  2FYU I;  1PPJ I;  1PP9 I;  3L73 I;  1SQX I;  3H1J I;  3H1H I;  3H1K I;  1NU1 I;  1SQB I;  1SQP I;  3L74 I;  1NTZ I;  3H1L I;  3CWB I;  2A06 I; 
#chains in the Genus database with same CATH topology
 3L72 I;  1L0L I;  3L70 I;  1SQQ I;  3H1I I;  1NTK I;  3TGU I;  1L0N I;  1NTM I;  1SQV I;  4U3F I;  3L71 I;  3L75 I;  2FYU I;  1PPJ I;  1PP9 I;  3L73 I;  1SQX I;  3H1J I;  3H1H I;  3H1K I;  1NU1 I;  1SQB I;  1SQP I;  3L74 I;  1NTZ I;  3H1L I;  3CWB I;  2A06 I; 
#chains in the Genus database with same CATH homology
 3L72 I;  1L0L I;  3L70 I;  1SQQ I;  3H1I I;  1NTK I;  3TGU I;  1L0N I;  1NTM I;  1SQV I;  4U3F I;  3L71 I;  3L75 I;  2FYU I;  1PPJ I;  1PP9 I;  3L73 I;  1SQX I;  3H1J I;  3H1H I;  3H1K I;  1NU1 I;  1SQB I;  1SQP I;  3L74 I;  1NTZ I;  3H1L I;  3CWB I;  2A06 I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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