1OHG | Genus

Total Genus 67

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	67
sequence length	280
structure length	280
Chain Sequence	SLGSDADSAGSLIQPMQIPGIIMPGLRRLTIRDLLAQGRTSSNALEYVREEVFTNNADVVAEKALKPESDITFSKQTANVKTIAHWVQASRQVMDDAPMLQSYINNRLMYGLALKEEGQLLNGDGTGDNLEGLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFGGPQAFTSNIMWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFSS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The Refined Structure of a Protein Catenane: The Hk97 Bacteriophage Capsid at 3.44A Resolution pubmed doi rcsb
molecule keywords	MAJOR CAPSID PROTEIN
molecule tags	Virus
source organism	Bacteriophage hk97
total genus	67
structure length	280
sequence length	280
chains with identical sequence	B, C, D, E, F, G
ec nomenclature
pdb deposition date	2003-05-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05065	Phage_capsid	Phage capsid family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	1ohgA02
3.30.2400.10	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold	Major capsid protein gp5	1ohgA01

2E0ZA 2PK8A 3E8KA 1OHGA 2FT1A 3DKTA 2FSYA
chains in the Genus database with same CATH superfamily

3K5BA 4DL0E 2LC0A 1OHGA 3A44A 2FT1A 2DM9A 5AUOA 1QU3A 2E0ZA 1YUEA 2PK8A 3E8KA 5AUPA 2FSYA 5AUNA 2DMAA 1WZ2A 3A43A 3V6IA 2KDXA 3DKTA 4EFAE 4DT0A
chains in the Genus database with same CATH topology

2E0ZA 2PK8A 3E8KA 1OHGA 2FT1A 3DKTA 2FSYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2E0Z A;  2PK8 A;  3E8K A;  1OHG A;  2FT1 A;  3DKT A;  2FSY A; 
#chains in the Genus database with same CATH topology
 3K5B A;  4DL0 E;  2LC0 A;  1OHG A;  3A44 A;  2FT1 A;  2DM9 A;  5AUO A;  1QU3 A;  2E0Z A;  1YUE A;  2PK8 A;  3E8K A;  5AUP A;  2FSY A;  5AUN A;  2DMA A;  1WZ2 A;  3A43 A;  3V6I A;  2KDX A;  3DKT A;  4EFA E;  4DT0 A; 
#chains in the Genus database with same CATH homology
 2E0Z A;  2PK8 A;  3E8K A;  1OHG A;  2FT1 A;  3DKT A;  2FSY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OHGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations