1YUEA

Bacteriophage t4 capsid vertex protein gp24
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
421
structure length
390
Chain Sequence
AKINELLRESTTTNSNSIGRPNLVALTRATTKLIYSDIVATQRTNQPVAAFYGIKYLNPDNEQITELTEESKLTLNKGDLFKYNNIVYKVLEDTPFATIEESDLELALQIAIVLLKVRLFSDEIADARFQINKWQTAVKSRKLKTGITVELAQDLEANGFDAPNFLEDLLATEMADEINKDILQSLITVSKRYKVTGITDSGFIDLSYASAPEAGRSLYRMVCEMVSHIQKESTYTATFCVASARAAAILAASGWLKHKPEDDKYLSQNAYGFLANGLPLYCDTNSPLDYVIVGVVENIGEKEIVGSIFYAPYTEGLDLDDPEHVGAFKVVVDPESLQPSIGLLVRYALSANPYTVAKDEKEARIIDGGDMDKMAGRSDLSVLLGVKLPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Head vertex protein Gp24
publication title Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.
pubmed doi rcsb
source organism Enterobacteria phage t4
molecule tags Viral protein
total genus 83
structure length 390
sequence length 421
ec nomenclature
pdb deposition date 2005-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07068 Gp23 Major capsid protein Gp23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.40 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 1yueA02
3.30.2320.40 Alpha Beta 2-Layer Sandwich hypothetical protein PF0899 fold hypothetical protein PF0899 fold 1yueA03
1YUEA
chains in the Genus database with same CATH superfamily
3WX7A 1OGBA 4OJLA 3WD2A 4IJEA 2D49A 2FFFB 3L27A 2Y2OA 1ED7A 4MB4A 4NZ4A 3L25A 4OJ5A 2FN2A 4Z2GA 4LG2A 2BG1A 4OJOA 1AIWA 1CK7A 1W1TA 1OHGA 2E0ZA 3WD0A 3E8KA 4TX8A 4Z2JA 2LC0A 2PK8A 2RTSA 4GHLA 4IBIA 3WD4A 1KS0A 2Y2NA 1YU2A 1YU4A 4HMEA 3L29A 3A43A 3L26A 2Y2GA 4Z2HA 2FSYA 4MB5A 2Y2IA 2Y2LA 4NZ1A 4NZ3A 3A44A 2V5OA 4OUIA 2JE5A 1QO6A 3DKTA 3M7PA 2KDXA 1YU1A 4EFAE 4GH9A 5AUNA 1YU0A 1CXWA 3V6IA 1E15A 4HMDA 1L6JA 4QNLA 4IBBA 2IOUA 1EAKA 3L2AA 3L28A 3KS8A 1E6RA 3WD1A 4IBCA 2DMAA 1E6ZA 1H0GA 4NZ5A 4Z2KA 1GXDA 2Y2KA 1J7MA 1H8PA 1H0IA 4IBGA 3KS4A 4DT0A 2Y2JA 1GOIA 4MB3A 2UWXA 1WZ2A 3K5BA 3HONA 4NYUA 2Y2HA 4NYYA 1W1VA 1QU3A 2FT1A 1E8BA 1W1YA 1O6IA 4NY2A 4HMCA 1OGGA 1E88A 2Y2PA 4IBDA 4IBJA 3WD3A 3N3FA 1GPFA 2Y2QA 4IBKA 1PDCA 2Y2MA 4OJ6A 4Z2IA 4IBFA 5AUPA 3HSHA 3FKEA 1UR9A 4IBEA 5BPVA 4IJFA 4Z2LA 1YU3A 5AUOA 1E6PA 2DM9A 1YUEA 2JCHA 4DL0E 2XD1A 3MQLA 4GHAA 1E6NA 2XD5A 1W1PA 1UR8A 4OJPA
chains in the Genus database with same CATH topology
3WX7A 4OJLA 4IJEA 2FFFB 3L27A 2Y2OA 4NZ4A 3L25A 4OJ5A 4LG2A 2BG1A 4OJOA 2LC0A 4GHLA 4IBIA 2Y2NA 1YU2A 1YU4A 3L29A 3A43A 3L26A 2Y2GA 2Y2IA 2Y2LA 4NZ1A 4NZ3A 3A44A 4OUIA 2JE5A 2KDXA 1YU1A 4EFAE 4GH9A 5AUNA 1YU0A 3V6IA 4QNLA 4IBBA 2IOUA 3L2AA 3L28A 3KS8A 2DMAA 4IBCA 4NZ5A 2Y2KA 4IBGA 3KS4A 4DT0A 4OJPA 2Y2JA 2UWXA 3K5BA 3HONA 4NYUA 2Y2HA 4NYYA 4NY2A 2Y2PA 4IBDA 4IBJA 3N3FA 2Y2QA 4IBKA 2Y2MA 4OJ6A 4IBFA 3HSHA 3FKEA 4IBEA 5BPVA 4IJFA 1YU3A 5AUOA 2DM9A 1YUEA 2JCHA 4DL0E 2XD1A 4GHAA 2XD5A 5AUPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YUE A; 
#chains in the Genus database with same CATH topology
 3WX7 A;  1OGB A;  4OJL A;  3WD2 A;  4IJE A;  2D49 A;  2FFF B;  3L27 A;  2Y2O A;  1ED7 A;  4MB4 A;  4NZ4 A;  3L25 A;  4OJ5 A;  2FN2 A;  4Z2G A;  4LG2 A;  2BG1 A;  4OJO A;  1AIW A;  1CK7 A;  1W1T A;  1OHG A;  2E0Z A;  3WD0 A;  3E8K A;  4TX8 A;  4Z2J A;  2LC0 A;  2PK8 A;  2RTS A;  4GHL A;  4IBI A;  3WD4 A;  1KS0 A;  2Y2N A;  1YU2 A;  1YU4 A;  4HME A;  3L29 A;  3A43 A;  3L26 A;  2Y2G A;  4Z2H A;  2FSY A;  4MB5 A;  2Y2I A;  2Y2L A;  4NZ1 A;  4NZ3 A;  3A44 A;  2V5O A;  4OUI A;  2JE5 A;  1QO6 A;  3DKT A;  3M7P A;  2KDX A;  1YU1 A;  4EFA E;  4GH9 A;  5AUN A;  1YU0 A;  1CXW A;  3V6I A;  1E15 A;  4HMD A;  1L6J A;  4QNL A;  4IBB A;  2IOU A;  1EAK A;  3L2A A;  3L28 A;  3KS8 A;  1E6R A;  3WD1 A;  4IBC A;  2DMA A;  1E6Z A;  1H0G A;  4NZ5 A;  4Z2K A;  1GXD A;  2Y2K A;  1J7M A;  1H8P A;  1H0I A;  4IBG A;  3KS4 A;  4DT0 A;  2Y2J A;  1GOI A;  4MB3 A;  2UWX A;  1WZ2 A;  3K5B A;  3HON A;  4NYU A;  2Y2H A;  4NYY A;  1W1V A;  1QU3 A;  2FT1 A;  1E8B A;  1W1Y A;  1O6I A;  4NY2 A;  4HMC A;  1OGG A;  1E88 A;  2Y2P A;  4IBD A;  4IBJ A;  3WD3 A;  3N3F A;  1GPF A;  2Y2Q A;  4IBK A;  1PDC A;  2Y2M A;  4OJ6 A;  4Z2I A;  4IBF A;  5AUP A;  3HSH A;  3FKE A;  1UR9 A;  4IBE A;  5BPV A;  4IJF A;  4Z2L A;  1YU3 A;  5AUO A;  1E6P A;  2DM9 A;  1YUE A;  2JCH A;  4DL0 E;  2XD1 A;  3MQL A;  4GHA A;  1E6N A;  2XD5 A;  1W1P A;  1UR8 A;  4OJP A; 
#chains in the Genus database with same CATH homology
 3WX7 A;  4OJL A;  4IJE A;  2FFF B;  3L27 A;  2Y2O A;  4NZ4 A;  3L25 A;  4OJ5 A;  4LG2 A;  2BG1 A;  4OJO A;  2LC0 A;  4GHL A;  4IBI A;  2Y2N A;  1YU2 A;  1YU4 A;  3L29 A;  3A43 A;  3L26 A;  2Y2G A;  2Y2I A;  2Y2L A;  4NZ1 A;  4NZ3 A;  3A44 A;  4OUI A;  2JE5 A;  2KDX A;  1YU1 A;  4EFA E;  4GH9 A;  5AUN A;  1YU0 A;  3V6I A;  4QNL A;  4IBB A;  2IOU A;  3L2A A;  3L28 A;  3KS8 A;  2DMA A;  4IBC A;  4NZ5 A;  2Y2K A;  4IBG A;  3KS4 A;  4DT0 A;  4OJP A;  2Y2J A;  2UWX A;  3K5B A;  3HON A;  4NYU A;  2Y2H A;  4NYY A;  4NY2 A;  2Y2P A;  4IBD A;  4IBJ A;  3N3F A;  2Y2Q A;  4IBK A;  2Y2M A;  4OJ6 A;  4IBF A;  3HSH A;  3FKE A;  4IBE A;  5BPV A;  4IJF A;  1YU3 A;  5AUO A;  2DM9 A;  1YUE A;  2JCH A;  4DL0 E;  2XD1 A;  4GHA A;  2XD5 A;  5AUP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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