1YUEA

Bacteriophage t4 capsid vertex protein gp24
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
421
structure length
390
Chain Sequence
AKINELLRESTTTNSNSIGRPNLVALTRATTKLIYSDIVATQRTNQPVAAFYGIKYLNPDNEQITELTEESKLTLNKGDLFKYNNIVYKVLEDTPFATIEESDLELALQIAIVLLKVRLFSDEIADARFQINKWQTAVKSRKLKTGITVELAQDLEANGFDAPNFLEDLLATEMADEINKDILQSLITVSKRYKVTGITDSGFIDLSYASAPEAGRSLYRMVCEMVSHIQKESTYTATFCVASARAAAILAASGWLKHKPEDDKYLSQNAYGFLANGLPLYCDTNSPLDYVIVGVVENIGEKEIVGSIFYAPYTEGLDLDDPEHVGAFKVVVDPESLQPSIGLLVRYALSANPYTVAKDEKEARIIDGGDMDKMAGRSDLSVLLGVKLPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Head vertex protein Gp24
publication title Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.
pubmed doi rcsb
source organism Enterobacteria phage t4
total genus 83
structure length 390
sequence length 421
ec nomenclature
pdb deposition date 2005-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07068 Gp23 Major capsid protein Gp23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.40 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 1yueA02
3.30.2320.40 Alpha Beta 2-Layer Sandwich hypothetical protein PF0899 fold hypothetical protein PF0899 fold 1yueA03
1YUEA
chains in the Genus database with same CATH superfamily
1YU1A 1CXWA 3DKTA 1EAKA 1W1YA 3WD3A 4OJ6A 4NY2A 1QU3A 2D49A 4Z2GA 2Y2IA 4Z2LA 3HSHA 1UR8A 3L28A 2IOUA 4MB5A 1E6ZA 1OGBA 1OHGA 3E8KA 3N3FA 1GOIA 4IBCA 4EFAE 2LC0A 1KS0A 3KS8A 5AUNA 4LG2A 4DL0E 4QNLA 4IBIA 4GHLA 4DT0A 4IBKA 4MB3A 4OJOA 1E6PA 3A43A 1OGGA 1PDCA 4HMEA 4NYUA 2Y2QA 3WX7A 3L25A 3WD2A 4OJPA 5AUOA 1YU4A 2DMAA 1H0GA 1H8PA 4NZ3A 2Y2GA 1J7MA 3L27A 4HMCA 4Z2JA 3MQLA 1YU3A 2Y2HA 2FSYA 3WD1A 1E6NA 3M7PA 4IBDA 2E0ZA 2FN2A 4IJEA 4NYYA 4IJFA 2RTSA 4MB4A 2Y2JA 4HMDA 1L6JA 3WD0A 2BG1A 4GHAA 4OJLA 1E15A 1W1TA 1YU0A 4IBEA 2Y2PA 2Y2LA 4IBFA 3K5BA 2DM9A 3KS4A 4Z2HA 1W1PA 4NZ5A 2JE5A 5AUPA 4OUIA 3A44A 1YUEA 4TX8A 3L26A 2XD1A 1E88A 1CK7A 1AIWA 1WZ2A 4Z2KA 2XD5A 4Z2IA 2Y2NA 4IBBA 2JCHA 1E8BA 1H0IA 4IBGA 2FT1A 1YU2A 2Y2KA 1QO6A 4NZ1A 4GH9A 3HONA 2Y2MA 4NZ4A 1ED7A 1GXDA 2KDXA 3V6IA 3WD4A 2FFFB 3FKEA 1O6IA 1UR9A 1W1VA 2UWXA 1GPFA 2V5OA 2PK8A 3L29A 1E6RA 3L2AA 4IBJA 5BPVA 2Y2OA 4OJ5A
chains in the Genus database with same CATH topology
1YU1A 4OJ6A 4NY2A 2Y2IA 3HSHA 3L28A 2IOUA 4EFAE 3N3FA 4IBCA 2LC0A 3KS8A 5AUNA 4LG2A 4DL0E 4QNLA 4IBIA 4GHLA 4DT0A 4IBKA 4OJOA 3A43A 4NYUA 2Y2QA 3WX7A 3L25A 4OJPA 5AUOA 1YU4A 2DMAA 4NZ3A 2Y2GA 3L27A 1YU3A 2Y2HA 4IBDA 4IJEA 4NYYA 4IJFA 2Y2JA 2BG1A 4GHAA 4OJLA 1YU0A 4IBEA 2Y2PA 2Y2LA 3K5BA 4IBFA 2DM9A 3KS4A 4NZ5A 2JE5A 5AUPA 4OUIA 3A44A 1YUEA 3L26A 2XD1A 2XD5A 2Y2NA 4IBBA 2JCHA 4IBGA 1YU2A 2Y2KA 4NZ1A 4GH9A 3HONA 2Y2MA 4NZ4A 2KDXA 3V6IA 2FFFB 3FKEA 2UWXA 3L29A 3L2AA 4IBJA 5BPVA 2Y2OA 4OJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YUE A; 
#chains in the Genus database with same CATH topology
 1YU1 A;  1CXW A;  3DKT A;  1EAK A;  1W1Y A;  3WD3 A;  4OJ6 A;  4NY2 A;  1QU3 A;  2D49 A;  4Z2G A;  2Y2I A;  4Z2L A;  3HSH A;  1UR8 A;  3L28 A;  2IOU A;  4MB5 A;  1E6Z A;  1OGB A;  1OHG A;  3E8K A;  3N3F A;  1GOI A;  4IBC A;  4EFA E;  2LC0 A;  1KS0 A;  3KS8 A;  5AUN A;  4LG2 A;  4DL0 E;  4QNL A;  4IBI A;  4GHL A;  4DT0 A;  4IBK A;  4MB3 A;  4OJO A;  1E6P A;  3A43 A;  1OGG A;  1PDC A;  4HME A;  4NYU A;  2Y2Q A;  3WX7 A;  3L25 A;  3WD2 A;  4OJP A;  5AUO A;  1YU4 A;  2DMA A;  1H0G A;  1H8P A;  4NZ3 A;  2Y2G A;  1J7M A;  3L27 A;  4HMC A;  4Z2J A;  3MQL A;  1YU3 A;  2Y2H A;  2FSY A;  3WD1 A;  1E6N A;  3M7P A;  4IBD A;  2E0Z A;  2FN2 A;  4IJE A;  4NYY A;  4IJF A;  2RTS A;  4MB4 A;  2Y2J A;  4HMD A;  1L6J A;  3WD0 A;  2BG1 A;  4GHA A;  4OJL A;  1E15 A;  1W1T A;  1YU0 A;  4IBE A;  2Y2P A;  2Y2L A;  4IBF A;  3K5B A;  2DM9 A;  3KS4 A;  4Z2H A;  1W1P A;  4NZ5 A;  2JE5 A;  5AUP A;  4OUI A;  3A44 A;  1YUE A;  4TX8 A;  3L26 A;  2XD1 A;  1E88 A;  1CK7 A;  1AIW A;  1WZ2 A;  4Z2K A;  2XD5 A;  4Z2I A;  2Y2N A;  4IBB A;  2JCH A;  1E8B A;  1H0I A;  4IBG A;  2FT1 A;  1YU2 A;  2Y2K A;  1QO6 A;  4NZ1 A;  4GH9 A;  3HON A;  2Y2M A;  4NZ4 A;  1ED7 A;  1GXD A;  2KDX A;  3V6I A;  3WD4 A;  2FFF B;  3FKE A;  1O6I A;  1UR9 A;  1W1V A;  2UWX A;  1GPF A;  2V5O A;  2PK8 A;  3L29 A;  1E6R A;  3L2A A;  4IBJ A;  5BPV A;  2Y2O A;  4OJ5 A; 
#chains in the Genus database with same CATH homology
 1YU1 A;  4OJ6 A;  4NY2 A;  2Y2I A;  3HSH A;  3L28 A;  2IOU A;  4EFA E;  3N3F A;  4IBC A;  2LC0 A;  3KS8 A;  5AUN A;  4LG2 A;  4DL0 E;  4QNL A;  4IBI A;  4GHL A;  4DT0 A;  4IBK A;  4OJO A;  3A43 A;  4NYU A;  2Y2Q A;  3WX7 A;  3L25 A;  4OJP A;  5AUO A;  1YU4 A;  2DMA A;  4NZ3 A;  2Y2G A;  3L27 A;  1YU3 A;  2Y2H A;  4IBD A;  4IJE A;  4NYY A;  4IJF A;  2Y2J A;  2BG1 A;  4GHA A;  4OJL A;  1YU0 A;  4IBE A;  2Y2P A;  2Y2L A;  3K5B A;  4IBF A;  2DM9 A;  3KS4 A;  4NZ5 A;  2JE5 A;  5AUP A;  4OUI A;  3A44 A;  1YUE A;  3L26 A;  2XD1 A;  2XD5 A;  2Y2N A;  4IBB A;  2JCH A;  4IBG A;  1YU2 A;  2Y2K A;  4NZ1 A;  4GH9 A;  3HON A;  2Y2M A;  4NZ4 A;  2KDX A;  3V6I A;  2FFF B;  3FKE A;  2UWX A;  3L29 A;  3L2A A;  4IBJ A;  5BPV A;  2Y2O A;  4OJ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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