1PP9I

Bovine cytochrome bc1 complex with stigmatellin bound
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
47
structure length
42
Chain Sequence
AAVPATSESPVSVLCRESLRGQAAGRPLVASVSLNVPASVRY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Binding of the Respiratory Chain Inhibitor Antimycin to the Mitochondrial bc(1) Complex: A New Crystal Structure Reveals an Altered Intramolecular Hydrogen-bonding Pattern.
pubmed doi rcsb
molecule keywords Ubiquinol-cytochrome C reductase complex core protein I, mit
molecule tags Oxidoreductase
total genus 2
structure length 42
sequence length 47
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2003-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF09165 Ubiq-Cytc-red_N Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1pp9I00
3L72I 1NTZI 3H1JI 1SQQI 3H1KI 3CWBI 1NTKI 1PPJI 3L71I 3L73I 3L75I 1SQPI 2FYUI 3H1LI 3H1II 3L74I 1L0LI 1PP9I 2A06I 3L70I 1NTMI 1SQBI 1NU1I 1SQVI 3H1HI 4U3FI 3TGUI 1L0NI 1SQXI
chains in the Genus database with same CATH superfamily
3L72I 1NTZI 3H1JI 1SQQI 3H1KI 3CWBI 1NTKI 1PPJI 3L71I 3L73I 3L75I 1SQPI 2FYUI 3H1LI 3H1II 3L74I 1L0LI 1PP9I 2A06I 3L70I 1NTMI 1SQBI 1NU1I 1SQVI 3H1HI 4U3FI 3TGUI 1L0NI 1SQXI
chains in the Genus database with same CATH topology
3L72I 1NTZI 3H1JI 1SQQI 3H1KI 3CWBI 1NTKI 1PPJI 3L71I 3L73I 3L75I 1SQPI 2FYUI 3H1LI 3H1II 3L74I 1L0LI 1PP9I 2A06I 3L70I 1NTMI 1SQBI 1NU1I 1SQVI 3H1HI 4U3FI 3TGUI 1L0NI 1SQXI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3L72 I;  1NTZ I;  3H1J I;  1SQQ I;  3H1K I;  3CWB I;  1NTK I;  1PPJ I;  3L71 I;  3L73 I;  3L75 I;  1SQP I;  2FYU I;  3H1L I;  3H1I I;  3L74 I;  1L0L I;  1PP9 I;  2A06 I;  3L70 I;  1NTM I;  1SQB I;  1NU1 I;  1SQV I;  3H1H I;  4U3F I;  3TGU I;  1L0N I;  1SQX I; 
#chains in the Genus database with same CATH topology
 3L72 I;  1NTZ I;  3H1J I;  1SQQ I;  3H1K I;  3CWB I;  1NTK I;  1PPJ I;  3L71 I;  3L73 I;  3L75 I;  1SQP I;  2FYU I;  3H1L I;  3H1I I;  3L74 I;  1L0L I;  1PP9 I;  2A06 I;  3L70 I;  1NTM I;  1SQB I;  1NU1 I;  1SQV I;  3H1H I;  4U3F I;  3TGU I;  1L0N I;  1SQX I; 
#chains in the Genus database with same CATH homology
 3L72 I;  1NTZ I;  3H1J I;  1SQQ I;  3H1K I;  3CWB I;  1NTK I;  1PPJ I;  3L71 I;  3L73 I;  3L75 I;  1SQP I;  2FYU I;  3H1L I;  3H1I I;  3L74 I;  1L0L I;  1PP9 I;  2A06 I;  3L70 I;  1NTM I;  1SQB I;  1NU1 I;  1SQV I;  3H1H I;  4U3F I;  3TGU I;  1L0N I;  1SQX I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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