1PPJI

Bovine cytochrome bc1 complex with stigmatellin and antimycin
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
47
structure length
43
Chain Sequence
AAVPATSESPVLSVLCRESLRGQAAGRPLVASVSLNVPASVRY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Binding of the Respiratory Chain Inhibitor Antimycin to the Mitochondrial bc(1) Complex: A New Crystal Structure Reveals an Altered Intramolecular Hydrogen-bonding Pattern.
pubmed doi rcsb
molecule keywords Ubiquinol-cytochrome C reductase complex core protein I, mit
molecule tags Oxidoreductase
total genus 2
structure length 43
sequence length 47
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2003-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF09165 Ubiq-Cytc-red_N Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1ppjI00
3H1II 1SQQI 3H1JI 3H1HI 2A06I 4U3FI 1NTMI 1SQXI 1L0LI 3H1LI 1NTZI 3L73I 3L74I 2FYUI 1SQBI 1PPJI 3L72I 3CWBI 3TGUI 1PP9I 3L71I 3H1KI 1SQPI 1SQVI 1NU1I 3L70I 1L0NI 3L75I 1NTKI
chains in the Genus database with same CATH superfamily
3H1II 1SQQI 3H1JI 3H1HI 2A06I 4U3FI 1NTMI 1SQXI 1L0LI 3H1LI 1NTZI 3L73I 3L74I 2FYUI 1SQBI 1PPJI 3L72I 3CWBI 3TGUI 1PP9I 3L71I 3H1KI 1SQPI 1SQVI 1NU1I 3L70I 1L0NI 3L75I 1NTKI
chains in the Genus database with same CATH topology
3H1II 1SQQI 3H1JI 3H1HI 2A06I 4U3FI 1NTMI 1SQXI 1L0LI 3H1LI 1NTZI 3L73I 3L74I 2FYUI 1SQBI 1PPJI 3L72I 3CWBI 3TGUI 1PP9I 3L71I 3H1KI 1SQPI 1SQVI 1NU1I 3L70I 1L0NI 3L75I 1NTKI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3H1I I;  1SQQ I;  3H1J I;  3H1H I;  2A06 I;  4U3F I;  1NTM I;  1SQX I;  1L0L I;  3H1L I;  1NTZ I;  3L73 I;  3L74 I;  2FYU I;  1SQB I;  1PPJ I;  3L72 I;  3CWB I;  3TGU I;  1PP9 I;  3L71 I;  3H1K I;  1SQP I;  1SQV I;  1NU1 I;  3L70 I;  1L0N I;  3L75 I;  1NTK I; 
#chains in the Genus database with same CATH topology
 3H1I I;  1SQQ I;  3H1J I;  3H1H I;  2A06 I;  4U3F I;  1NTM I;  1SQX I;  1L0L I;  3H1L I;  1NTZ I;  3L73 I;  3L74 I;  2FYU I;  1SQB I;  1PPJ I;  3L72 I;  3CWB I;  3TGU I;  1PP9 I;  3L71 I;  3H1K I;  1SQP I;  1SQV I;  1NU1 I;  3L70 I;  1L0N I;  3L75 I;  1NTK I; 
#chains in the Genus database with same CATH homology
 3H1I I;  1SQQ I;  3H1J I;  3H1H I;  2A06 I;  4U3F I;  1NTM I;  1SQX I;  1L0L I;  3H1L I;  1NTZ I;  3L73 I;  3L74 I;  2FYU I;  1SQB I;  1PPJ I;  3L72 I;  3CWB I;  3TGU I;  1PP9 I;  3L71 I;  3H1K I;  1SQP I;  1SQV I;  1NU1 I;  3L70 I;  1L0N I;  3L75 I;  1NTK I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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