1QQH | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	144
structure length	144
Chain Sequence	KSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVIDCNDSMCSTSDDTVS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Human papillomavirus type 18
publication title	Crystal structure of the human papillomavirus type 18 E2 activation domain. pubmed doi rcsb
molecule keywords	PAPILLOMAVIRUS TRANSCRIPTION FACTOR E2
total genus	34
structure length	144
sequence length	144
ec nomenclature
pdb deposition date	1999-06-05

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.200.10	Mainly Beta	Beta Complex	Regulatory Protein E2; Chain: A; Domain 2	Regulatory Protein E2; Chain: A; Domain 2	1qqhA00

2JEUA 1R6KA 1TUEB 1R6NA 2JEXA 1DTOA 2NNUA 1QQHA
chains in the Genus database with same CATH superfamily

2JEUA 1R6KA 1TUEB 1R6NA 2JEXA 1DTOA 2NNUA 1QQHA
chains in the Genus database with same CATH topology

2JEUA 1R6KA 1TUEB 1R6NA 2JEXA 1DTOA 2NNUA 1QQHA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2JEU A;  1R6K A;  1TUE B;  1R6N A;  2JEX A;  1DTO A;  2NNU A;  1QQH A; 
#chains in the Genus database with same CATH topology
 2JEU A;  1R6K A;  1TUE B;  1R6N A;  2JEX A;  1DTO A;  2NNU A;  1QQH A; 
#chains in the Genus database with same CATH homology
 2JEU A;  1R6K A;  1TUE B;  1R6N A;  2JEX A;  1DTO A;  2NNU A;  1QQH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1QQHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN