1RZZ | Genus

Total Genus 102

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	102
sequence length	281
structure length	281
Chain Sequence	ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHENTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	X-Ray Structure Determination of Three Mutants of the Bacterial Photosynthetic Reaction Centers from Rb. sphaeroides; Altered Proton Transfer Pathways. pubmed doi rcsb
molecule keywords	Reaction center protein L chain
molecule tags	Photosynthesis
source organism	Rhodobacter sphaeroides
total genus	102
structure length	281
sequence length	281
chains with identical sequence	R
ec nomenclature
pdb deposition date	2003-12-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
L	PF00124	Photo_RC	Photosynthetic reaction centre protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M; domain 1	Photosystem II protein D1-like	1rzzL01
1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M; domain 1	Photosystem II protein D1-like	1rzzL02

2UX5M 1L9JM 1F6NL 2RCRL 3DU3L 4HBJM 3G7FL 1OGVL 1R2CM 1RY5M 3DSYL 1DV6M 1S00L 2UWSM 2UX3L 3DTRL 1FNPL 2BNSA 2J8DM 1RZHL 2JIYM 2HHKM 1PSTM 2UWUL 1K6NL 1PSSL 3WMML 4CASB 2UXLM 1JGZL 1RG5M 2GMRL 4IN6L 1R2CL 1JGWL 1DXRL 3PRCM 3V3YM 1KBYM 1K6LL 2UWSL 3D38M 3ZUWL 2BOZL 1RQKM 4N7LM 1YF6M 2UWVL 1RGNL 2HG9M 2JBLL 3ZUMM 3DUQM 2J8CL 3DTAL 2UXKM 2UXLL 7PRCM 2WX5L 1L9BL 2PRCL 4HBHL 4N7KL 1EYSL 1QOVM 2BNSB 6PRCL 2HITM 1DS8M 3D38L 1JH0L 1JGXL 4TQQL 1MPSM 1JGYL 2JJ0M 4IN5L 2HG3M 1RQKL 1YSTM 1RVJL 2X5VM 3DTSM 3DUQL 5LRIL 1M3XM 3I4DL 2UX5L 1L9JL 5PRCM 1VRNM 2HITL 4HBJL 2HH1M 2X5UM 1RY5L 4RCRM 1AIGM 1DV6L 2WJMM 5LSEM 3T6DM 1FNQM 2UWTM 2J8DL 2JIYL 2GNUM 3DU2M 2HHKL 4H9LM 1PSTL 1E6DM 1PRCM 3V3ZM 5PRCL 1RG5L 4LWYM 2I5NM 2UX4M 3T6EM 1RZZM 1PCRM 3PRCL 4IN7M 1E14M 1KBYL 2WJML 3V3YL 2HJ6M 2WJNM 1UMXM 1DV3M 4N7LL 1YF6L 2UXMM 2HG9L 3V3ZL 3ZUML 1F6NM 2RCRM 2UXKL 7PRCL 3DU3M 2I5NL 3G7FM 1OGVM 1QOVL 1DS8L 1S00M 2UX3M 3DTRM 1FNPM 4H99M 1RZHM 1MPSL 4CASC 2JJ0L 2HG3L 1K6NM 2UWUM 1YSTL 2UXML 2UXJM 1PSSM 2UWWL 3WMMM 5LRIM 2X5VL 3DTSL 1JGZM 1M3XL 2GMRM 4IN6M 2BNPA 1JGWM 1DXRM 1VRNL 1K6LM 3ZUWM 2HH1L 2X5UL 4H99L 1AIJM 2BOZM 4RCRL 1AIGL 5LSEL 3T6DL 1FNQL 2UWTL 2UWVM 2GNUL 3DU2L 2UXJL 1RGNM 2JBLM 4H9LL 2UWWM 1E6DL 2J8CM 3DTAM 1PRCL 2WX5M 1L9BM 2PRCM 4HBHM 4N7KM 1EYSM 6PRCM 4LWYL 2UX4L 1JGXM 1JH0M 3T6EL 3DSYM 1AIJL 1PCRL 1JGYM 1RZZL 4IN7L 1E14L 4TQQM 4IN5M 2HJ6L 2WJNL 1UMXL 1DV3L 1RVJM 2BNPB 3I4DM
chains in the Genus database with same CATH superfamily

2UX5M 1L9JM 1F6NL 2RCRL 3DU3L 4HBJM 3G7FL 1OGVL 1R2CM 1RY5M 3DSYL 1DV6M 1S00L 2UWSM 2UX3L 3DTRL 1FNPL 2BNSA 2J8DM 1RZHL 2JIYM 2HHKM 1PSTM 2UWUL 1K6NL 1PSSL 3WMML 4CASB 2UXLM 1JGZL 1RG5M 2GMRL 4IN6L 1R2CL 1JGWL 1DXRL 3PRCM 3V3YM 1KBYM 1K6LL 2UWSL 3D38M 3ZUWL 2BOZL 1RQKM 4N7LM 1YF6M 2UWVL 1RGNL 2HG9M 2JBLL 3ZUMM 3DUQM 2J8CL 3DTAL 2UXKM 2UXLL 7PRCM 2WX5L 1L9BL 2PRCL 4HBHL 4N7KL 1EYSL 1QOVM 2BNSB 6PRCL 2HITM 1DS8M 3D38L 1JH0L 1JGXL 4TQQL 1MPSM 1JGYL 2JJ0M 4IN5L 2HG3M 1RQKL 1YSTM 1RVJL 2X5VM 3DTSM 3DUQL 5LRIL 1M3XM 3I4DL 2UX5L 1L9JL 5PRCM 1VRNM 2HITL 4HBJL 3WRXC 2HH1M 2X5UM 1RY5L 4RCRM 1AIGM 1DV6L 2WJMM 5LSEM 3T6DM 1FNQM 2UWTM 2J8DL 2JIYL 2GNUM 3DU2M 2HHKL 4H9LM 1PSTL 1E6DM 1PRCM 3V3ZM 5PRCL 1RG5L 4LWYM 2I5NM 2UX4M 3T6EM 1RZZM 1PCRM 3PRCL 4IN7M 1E14M 1KBYL 2WJML 3V3YL 2HJ6M 2WJNM 1UMXM 1DV3M 4N7LL 1YF6L 2UXMM 2HG9L 3V3ZL 3ZUML 1F6NM 2RCRM 2UXKL 7PRCL 3DU3M 2I5NL 3G7FM 1OGVM 1QOVL 3WRYC 1DS8L 1S00M 2UX3M 3DTRM 1FNPM 4H99M 1RZHM 1MPSL 4CASC 2JJ0L 2HG3L 1K6NM 2UWUM 1YSTL 2UXML 2UXJM 1PSSM 2UWWL 3WMMM 5LRIM 2X5VL 3DTSL 1JGZM 1M3XL 2GMRM 4IN6M 2BNPA 1JGWM 1DXRM 1VRNL 1K6LM 3ZUWM 2HH1L 2X5UL 4H99L 1AIJM 2BOZM 4RCRL 1AIGL 5LSEL 3T6DL 1FNQL 2UWTL 2UWVM 2GNUL 3DU2L 2UXJL 1RGNM 2JBLM 4H9LL 2UWWM 1E6DL 2J8CM 3DTAM 1PRCL 2WX5M 1L9BM 2PRCM 4HBHM 4N7KM 1EYSM 6PRCM 4LWYL 2UX4L 1JGXM 1JH0M 3T6EL 3DSYM 1AIJL 1PCRL 1JGYM 1RZZL 4IN7L 1E14L 4TQQM 4IN5M 3VKWA 2HJ6L 2WJNL 1UMXL 1DV3L 1RVJM 2BNPB 3I4DM
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2UX5 M;  1L9J M;  1F6N L;  2RCR L;  3DU3 L;  4HBJ M;  3G7F L;  1OGV L;  1R2C M;  1RY5 M;  3DSY L;  1DV6 M;  1S00 L;  2UWS M;  2UX3 L;  3DTR L;  1FNP L;  2BNS A;  2J8D M;  1RZH L;  2JIY M;  2HHK M;  1PST M;  2UWU L;  1K6N L;  1PSS L;  3WMM L;  4CAS B;  2UXL M;  1JGZ L;  1RG5 M;  2GMR L;  4IN6 L;  1R2C L;  1JGW L;  1DXR L;  3PRC M;  3V3Y M;  1KBY M;  1K6L L;  2UWS L;  3D38 M;  3ZUW L;  2BOZ L;  1RQK M;  4N7L M;  1YF6 M;  2UWV L;  1RGN L;  2HG9 M;  2JBL L;  3ZUM M;  3DUQ M;  2J8C L;  3DTA L;  2UXK M;  2UXL L;  7PRC M;  2WX5 L;  1L9B L;  2PRC L;  4HBH L;  4N7K L;  1EYS L;  1QOV M;  2BNS B;  6PRC L;  2HIT M;  1DS8 M;  3D38 L;  1JH0 L;  1JGX L;  4TQQ L;  1MPS M;  1JGY L;  2JJ0 M;  4IN5 L;  2HG3 M;  1RQK L;  1YST M;  1RVJ L;  2X5V M;  3DTS M;  3DUQ L;  5LRI L;  1M3X M;  3I4D L;  2UX5 L;  1L9J L;  5PRC M;  1VRN M;  2HIT L;  4HBJ L;  2HH1 M;  2X5U M;  1RY5 L;  4RCR M;  1AIG M;  1DV6 L;  2WJM M;  5LSE M;  3T6D M;  1FNQ M;  2UWT M;  2J8D L;  2JIY L;  2GNU M;  3DU2 M;  2HHK L;  4H9L M;  1PST L;  1E6D M;  1PRC M;  3V3Z M;  5PRC L;  1RG5 L;  4LWY M;  2I5N M;  2UX4 M;  3T6E M;  1RZZ M;  1PCR M;  3PRC L;  4IN7 M;  1E14 M;  1KBY L;  2WJM L;  3V3Y L;  2HJ6 M;  2WJN M;  1UMX M;  1DV3 M;  4N7L L;  1YF6 L;  2UXM M;  2HG9 L;  3V3Z L;  3ZUM L;  1F6N M;  2RCR M;  2UXK L;  7PRC L;  3DU3 M;  2I5N L;  3G7F M;  1OGV M;  1QOV L;  1DS8 L;  1S00 M;  2UX3 M;  3DTR M;  1FNP M;  4H99 M;  1RZH M;  1MPS L;  4CAS C;  2JJ0 L;  2HG3 L;  1K6N M;  2UWU M;  1YST L;  2UXM L;  2UXJ M;  1PSS M;  2UWW L;  3WMM M;  5LRI M;  2X5V L;  3DTS L;  1JGZ M;  1M3X L;  2GMR M;  4IN6 M;  2BNP A;  1JGW M;  1DXR M;  1VRN L;  1K6L M;  3ZUW M;  2HH1 L;  2X5U L;  4H99 L;  1AIJ M;  2BOZ M;  4RCR L;  1AIG L;  5LSE L;  3T6D L;  1FNQ L;  2UWT L;  2UWV M;  2GNU L;  3DU2 L;  2UXJ L;  1RGN M;  2JBL M;  4H9L L;  2UWW M;  1E6D L;  2J8C M;  3DTA M;  1PRC L;  2WX5 M;  1L9B M;  2PRC M;  4HBH M;  4N7K M;  1EYS M;  6PRC M;  4LWY L;  2UX4 L;  1JGX M;  1JH0 M;  3T6E L;  3DSY M;  1AIJ L;  1PCR L;  1JGY M;  1RZZ L;  4IN7 L;  1E14 L;  4TQQ M;  4IN5 M;  2HJ6 L;  2WJN L;  1UMX L;  1DV3 L;  1RVJ M;  2BNP B;  3I4D M; 
#chains in the Genus database with same CATH topology
 2UX5 M;  1L9J M;  1F6N L;  2RCR L;  3DU3 L;  4HBJ M;  3G7F L;  1OGV L;  1R2C M;  1RY5 M;  3DSY L;  1DV6 M;  1S00 L;  2UWS M;  2UX3 L;  3DTR L;  1FNP L;  2BNS A;  2J8D M;  1RZH L;  2JIY M;  2HHK M;  1PST M;  2UWU L;  1K6N L;  1PSS L;  3WMM L;  4CAS B;  2UXL M;  1JGZ L;  1RG5 M;  2GMR L;  4IN6 L;  1R2C L;  1JGW L;  1DXR L;  3PRC M;  3V3Y M;  1KBY M;  1K6L L;  2UWS L;  3D38 M;  3ZUW L;  2BOZ L;  1RQK M;  4N7L M;  1YF6 M;  2UWV L;  1RGN L;  2HG9 M;  2JBL L;  3ZUM M;  3DUQ M;  2J8C L;  3DTA L;  2UXK M;  2UXL L;  7PRC M;  2WX5 L;  1L9B L;  2PRC L;  4HBH L;  4N7K L;  1EYS L;  1QOV M;  2BNS B;  6PRC L;  2HIT M;  1DS8 M;  3D38 L;  1JH0 L;  1JGX L;  4TQQ L;  1MPS M;  1JGY L;  2JJ0 M;  4IN5 L;  2HG3 M;  1RQK L;  1YST M;  1RVJ L;  2X5V M;  3DTS M;  3DUQ L;  5LRI L;  1M3X M;  3I4D L;  2UX5 L;  1L9J L;  5PRC M;  1VRN M;  2HIT L;  4HBJ L;  3WRX C;  2HH1 M;  2X5U M;  1RY5 L;  4RCR M;  1AIG M;  1DV6 L;  2WJM M;  5LSE M;  3T6D M;  1FNQ M;  2UWT M;  2J8D L;  2JIY L;  2GNU M;  3DU2 M;  2HHK L;  4H9L M;  1PST L;  1E6D M;  1PRC M;  3V3Z M;  5PRC L;  1RG5 L;  4LWY M;  2I5N M;  2UX4 M;  3T6E M;  1RZZ M;  1PCR M;  3PRC L;  4IN7 M;  1E14 M;  1KBY L;  2WJM L;  3V3Y L;  2HJ6 M;  2WJN M;  1UMX M;  1DV3 M;  4N7L L;  1YF6 L;  2UXM M;  2HG9 L;  3V3Z L;  3ZUM L;  1F6N M;  2RCR M;  2UXK L;  7PRC L;  3DU3 M;  2I5N L;  3G7F M;  1OGV M;  1QOV L;  3WRY C;  1DS8 L;  1S00 M;  2UX3 M;  3DTR M;  1FNP M;  4H99 M;  1RZH M;  1MPS L;  4CAS C;  2JJ0 L;  2HG3 L;  1K6N M;  2UWU M;  1YST L;  2UXM L;  2UXJ M;  1PSS M;  2UWW L;  3WMM M;  5LRI M;  2X5V L;  3DTS L;  1JGZ M;  1M3X L;  2GMR M;  4IN6 M;  2BNP A;  1JGW M;  1DXR M;  1VRN L;  1K6L M;  3ZUW M;  2HH1 L;  2X5U L;  4H99 L;  1AIJ M;  2BOZ M;  4RCR L;  1AIG L;  5LSE L;  3T6D L;  1FNQ L;  2UWT L;  2UWV M;  2GNU L;  3DU2 L;  2UXJ L;  1RGN M;  2JBL M;  4H9L L;  2UWW M;  1E6D L;  2J8C M;  3DTA M;  1PRC L;  2WX5 M;  1L9B M;  2PRC M;  4HBH M;  4N7K M;  1EYS M;  6PRC M;  4LWY L;  2UX4 L;  1JGX M;  1JH0 M;  3T6E L;  3DSY M;  1AIJ L;  1PCR L;  1JGY M;  1RZZ L;  4IN7 L;  1E14 L;  4TQQ M;  4IN5 M;  3VKW A;  2HJ6 L;  2WJN L;  1UMX L;  1DV3 L;  1RVJ M;  2BNP B;  3I4D M; 
#chains in the Genus database with same CATH homology
 2UX5 M;  1L9J M;  1F6N L;  2RCR L;  3DU3 L;  4HBJ M;  3G7F L;  1OGV L;  1R2C M;  1RY5 M;  3DSY L;  1DV6 M;  1S00 L;  2UWS M;  2UX3 L;  3DTR L;  1FNP L;  2BNS A;  2J8D M;  1RZH L;  2JIY M;  2HHK M;  1PST M;  2UWU L;  1K6N L;  1PSS L;  3WMM L;  4CAS B;  2UXL M;  1JGZ L;  1RG5 M;  2GMR L;  4IN6 L;  1R2C L;  1JGW L;  1DXR L;  3PRC M;  3V3Y M;  1KBY M;  1K6L L;  2UWS L;  3D38 M;  3ZUW L;  2BOZ L;  1RQK M;  4N7L M;  1YF6 M;  2UWV L;  1RGN L;  2HG9 M;  2JBL L;  3ZUM M;  3DUQ M;  2J8C L;  3DTA L;  2UXK M;  2UXL L;  7PRC M;  2WX5 L;  1L9B L;  2PRC L;  4HBH L;  4N7K L;  1EYS L;  1QOV M;  2BNS B;  6PRC L;  2HIT M;  1DS8 M;  3D38 L;  1JH0 L;  1JGX L;  4TQQ L;  1MPS M;  1JGY L;  2JJ0 M;  4IN5 L;  2HG3 M;  1RQK L;  1YST M;  1RVJ L;  2X5V M;  3DTS M;  3DUQ L;  5LRI L;  1M3X M;  3I4D L;  2UX5 L;  1L9J L;  5PRC M;  1VRN M;  2HIT L;  4HBJ L;  2HH1 M;  2X5U M;  1RY5 L;  4RCR M;  1AIG M;  1DV6 L;  2WJM M;  5LSE M;  3T6D M;  1FNQ M;  2UWT M;  2J8D L;  2JIY L;  2GNU M;  3DU2 M;  2HHK L;  4H9L M;  1PST L;  1E6D M;  1PRC M;  3V3Z M;  5PRC L;  1RG5 L;  4LWY M;  2I5N M;  2UX4 M;  3T6E M;  1RZZ M;  1PCR M;  3PRC L;  4IN7 M;  1E14 M;  1KBY L;  2WJM L;  3V3Y L;  2HJ6 M;  2WJN M;  1UMX M;  1DV3 M;  4N7L L;  1YF6 L;  2UXM M;  2HG9 L;  3V3Z L;  3ZUM L;  1F6N M;  2RCR M;  2UXK L;  7PRC L;  3DU3 M;  2I5N L;  3G7F M;  1OGV M;  1QOV L;  1DS8 L;  1S00 M;  2UX3 M;  3DTR M;  1FNP M;  4H99 M;  1RZH M;  1MPS L;  4CAS C;  2JJ0 L;  2HG3 L;  1K6N M;  2UWU M;  1YST L;  2UXM L;  2UXJ M;  1PSS M;  2UWW L;  3WMM M;  5LRI M;  2X5V L;  3DTS L;  1JGZ M;  1M3X L;  2GMR M;  4IN6 M;  2BNP A;  1JGW M;  1DXR M;  1VRN L;  1K6L M;  3ZUW M;  2HH1 L;  2X5U L;  4H99 L;  1AIJ M;  2BOZ M;  4RCR L;  1AIG L;  5LSE L;  3T6D L;  1FNQ L;  2UWT L;  2UWV M;  2GNU L;  3DU2 L;  2UXJ L;  1RGN M;  2JBL M;  4H9L L;  2UWW M;  1E6D L;  2J8C M;  3DTA M;  1PRC L;  2WX5 M;  1L9B M;  2PRC M;  4HBH M;  4N7K M;  1EYS M;  6PRC M;  4LWY L;  2UX4 L;  1JGX M;  1JH0 M;  3T6E L;  3DSY M;  1AIJ L;  1PCR L;  1JGY M;  1RZZ L;  4IN7 L;  1E14 L;  4TQQ M;  4IN5 M;  2HJ6 L;  2WJN L;  1UMX L;  1DV3 L;  1RVJ M;  2BNP B;  3I4D M;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1RZZL

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations