1SG2 | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	141
structure length	141
Chain Sequence	ADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 141 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

141 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Chaperone
source organism	Escherichia coli
publication title	Structure of the periplasmic chaperone Skp suggests functional similarity with cytosolic chaperones despite differing architecture. pubmed doi rcsb
molecule keywords	Seventeen Kilodalton Protein
total genus	51
structure length	141
sequence length	141
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2004-02-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03938	OmpH	Outer membrane protein (OmpH-like)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.910.20	Alpha Beta	2-Layer Sandwich	Protein Binding, DinI Protein; Chain A	Skp domain	1sg2A00

1U2MA 4KQTA 1SG2A
chains in the Genus database with same CATH superfamily

1U2MA 4EVXA 1DKIA 1PVJA 4KQTA 3BB7A 1SG2A 1GHHA
chains in the Genus database with same CATH topology

1U2MA 4KQTA 1SG2A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1U2M A;  4KQT A;  1SG2 A; 
#chains in the Genus database with same CATH topology
 1U2M A;  4EVX A;  1DKI A;  1PVJ A;  4KQT A;  3BB7 A;  1SG2 A;  1GHH A; 
#chains in the Genus database with same CATH homology
 1U2M A;  4KQT A;  1SG2 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1SG2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations