1DKIA

Crystal structure of the zymogen form of streptococcal pyrogenic exotoxin b active site (c47s) mutant
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
335
structure length
303
Chain Sequence
LDKVNLGGELSGSNMYVYNGFVIVSGDKRSPEILGYSTSGSFDVNGKENIASFMESYVEQIKENKKLPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWGGVSDGFFRLDALYQSAVVGIKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords PYROGENIC EXOTOXIN B ZYMOGEN
publication title Crystal structure of the zymogen form of the group A Streptococcus virulence factor SpeB: an integrin-binding cysteine protease.
pubmed doi rcsb
source organism Streptococcus pyogenes
total genus 70
structure length 303
sequence length 335
chains with identical sequence B, C, D
ec nomenclature ec 3.4.22.10: Streptopain.
pdb deposition date 1999-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
A PF13734 Inhibitor_I69 Spi protease inhibitor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.910.30 Alpha Beta 2-Layer Sandwich Protein Binding, DinI Protein; Chain A Protein Binding, DinI Protein; Chain A 1dkiA02
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 1dkiA01
4D8BA 1PVJA 4D8EA 1DKIA 4D8IA 3BBAA 4RKXA 3BB7A 2JTCA 2UZJA
chains in the Genus database with same CATH superfamily
2AVWA 1EWMA 5K16A 5CVMA 1CSBB 1CQDA 3KFQA 4N79A 1PVJA 6PADA 8PCHA 4QBBA 2JTCA 3OF9A 2JQGR 4BQVA 1CB5A 2AUZA 4IUMA 1U2MA 4MZSA 3P5UA 2JQFR 1AU2A 3PBHA 2BU3A 2CB5A 3PW3A 2P86A 3U8EA 2IPPB 2XU5A 3HWNA 3KWBX 1U9WA 4W5BA 3IMAA 5J94A 2FRQA 4N8WA 2AU1A 2FQ9A 2CIOA 2G6DA 1Y4HA 4QRGA 4MSXA 5CVNB 2AS8A 4ZTBA 3O65A 3OVXA 5CVOB 1NL6A 1CJLA 1CS8A 1AIMA 1YK7A 4RNAA 1GECE 3IFUA 4PADA 2R6NA 4P6EA 2PNSA 4OEMA 1MEGA 4CDFB 3CH2X 4BOUA 1K3BB 2FO5A 4ZUXU 3P5XA 2HD5A 3ZNHA 3MJ5A 3IUTA 3S3RA 3BB7A 3MHSA 4FIPA 2YJ8A 4G54A 3BY4A 1PXVA 1O0EA 1TU6A 5E6JA 3QJ3A 2O6XA 3PDFA 3IEJA 3OISA 2HHNA 3B21A 3WXGA 4CDEB 1ZCMA 3I06A 1PPNA 1A6RA 4REZA 1CVZA 1GHHA 4A5UA 4OVZB 4OELA 2FYEA 4YYVA 4OW0A 1BY8A 5JA7A 1ITOA 2DZZA 4D8EA 2YJBA 1PPPA 4R3DA 4W4UA 2YJ2A 2R9NA 2DCDA 4Q8GA 4AXLA 2ACTA 2OZ2A 2G8EA 3LXSA 1BQIA 3BCNA 3OQCA 5EZQA 2OP3A 2ATOA 1PADA 3GCBA 4EVXA 1QXPA 4P6GA 3ZUAA 5CHTA 4QH6A 1KXRA 2G8JA 1U9XA 1EWOA 1DKIA 1Q6KA 1EF7A 1KHPA 3BOWA 2DC8A 3TNXA 2VHFA 2HWKA 1EWPA 1VJVA 2JRIA 3TRKA 4I05A 4BOZA 4X6IA 2PREA 1STFE 2P7UA 3BWKA 1PPDA 1POPA 2B1MA 4WURA 4Q8HA 3QSDA 1KFXL 3HD3A 1GCBA 3KX1A 3I3TA 1PE6A 1CPJA 2BTWB 2DC9A 9PAPA 3KSEA 1MEMA 3PSEA 3K8UA 2NQAA 3HHIA 4RY2A 2F7DA 3H8BA 3N4CA 5JH3A 4GUAA 1AU3A 4PT5A 1AU4A 2P0RA 3PT2A 4K7CA 4HXDB 3W30A 2FRAA 2H7JA 3H89A 1GMYA 4W5CA 3AI8A 3C0RA 5EGWA 4WA6A 3KW9A 1CTEA 2J7QA 1SP4B 3H8CA 2DC7A 4BOQA 3RVWA 3BPFA 4RF0A 3MP2A 3WXEA 4MZOA 1F29A 4BS5A 1BP4A 1SNKA 5JZEA 2YJ9A 1HUCB 4RF1A 4KQTA 4I04A 3O0UA 1NLJA 3MHHA 1KHQA 4PP2E 2BDZA 5PADA 4YYWA 3WXFA 3CBKA 3RVXA 3S3QA 2XU1A 1QDQA 4YYSA 1AECA 4YYUA 3F5VA 5A24A 3PNRA 4CDDB 4PP1A 2Y5BA 3ERVA 1QOLA 1PIPA 1ME4A 4BS6A 1ATKA 3D6SA 4YVAA 5KO3A 4QRVA 1DEUA 1TLOA 1KFUL 3IV2A 2E01A 1DF0A 1UKFA 2R9OA 1AYVA 3IHPA 2VHSA 2WBFX 4XUIA 1NQCA 4BSQA 2DOSA 4FJCA 2DJFB 2AGAA 4D8IA 1IWDA 5FPWA 2R9MA 3PHUA 5CHVA 3USVA 2PBHA 4DMYA 1XKGA 2XU3A 2FTDA 3HHAA 4DMXA 1MS6A 2GHUA 2FE8A 1YT7A 1GLOA 3MORA 2HXZA 2NQIA 1NB3A 2J7QC 4HWYA 3PHWA 3BPMA 3E1ZB 4D8BA 2DJGB 4BOSA 2HH5A 2DZYA 3O1GA 2F1GA 1MIRA 2XU4A 4M0WA 1F2CA 4OVZA 3RVVA 1ME3A 3MTNA 2DC6A 2IBIA 3CBJA 3P5VA 3OVZA 4X6HA 2DCAA 1JQPA 1MDWA 1QMYA 4RKXA 3DF0A 3NHEA 2GFOA 3H7DA 1F2AA 3N3GA 4CZWA 4P16A 2Z84A 3M99A 2AUXA 3CH3X 1YVBA 2R9FA 2C0YA 1PPOA 2BDLA 4AXMA 4KLBA 1AYWA 1F2BA 4X6JA 3P5WA 2AIMA 1SG2A 2FT2A 1NB5A 2E02A 1AYUA 1Y08A 4YYRA 4I07A 1TL9A 3KWZA 3BBAA 2OULA 3PRMA 4MI7A 1YALA 1U9QX 3C9EA 1PBHA 5EZSA 1U9VA 1ICFA 2DCCA 4XR7A 3LFYA 3QT4A 2G7YA 3PHXA 3V6CA 4QRXA 3TMPA 4IP3A 2NQGA 2Y6EA 2E00A 1FH0A 1THEA 4YV8A 4CDCB 3RNVA 5F02A 1YZBA 2AYOA 4MM3B 1U5IA 1AU0A 3MTVA 4XZXA 1MHWA 3BC3A 3PRPA 3OF8A 1X9YA 1PCIA 2BTWA 3B79A 1CV8A 2AYNA 1ZIVA 3IOQA 3H6SA 3W31A 5EF4A 1BGOA 2PADA 3N3KA 4FK5A 4BOPA 2ARYA 3V6EA 2UZJA 7PCKA 4BPVA 4N4ZA 1VSNA 2R9CA 2B1NA 3K24A 2FUDA 1YK8A 3KKUA 3F75A 1NPZA 2YJCA 3E9SA 1M6DA 3K9MA 4PI3A 1EWLA 2DCBA 2NQDB 2E03A 4YYQA 1S4VA
chains in the Genus database with same CATH topology
4A5UA 3C0RA 4RKXA 4OVZB 2J7QA 1PVJA 4BOQA 4OW0A 2JTCA 4P16A 4RF0A 2Z84A 4IUMA 3MP2A 4D8EA 4R3DA 5JZEA 4RF1A 2BU3A 3BBAA 3PRMA 3OQCA 4MI7A 5EZSA 5EZQA 4EVXA 3PHXA 4ZTBA 5KO3A 3O65A 3TMPA 4IP3A 1DKIA 1UKFA 3RNVA 1YZBA 2DOSA 4MM3B 4RNAA 2AGAA 4D8IA 3MTVA 4XZXA 3IFUA 3PHUA 3PRPA 2HWKA 2JRIA 2BTWA 2FE8A 3TRKA 4BOZA 4BOUA 3W31A 2J7QC 4WURA 4BOPA 3PHWA 2UZJA 2BTWB 3ZNHA 4D8BA 3MJ5A 3BB7A 4BOSA 3PSEA 3BY4A 5E6JA 4M0WA 3E9SA 4OVZA 4GUAA 3B21A 4PT5A 3PT2A 4HXDB 3W30A 4REZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D8B A;  1PVJ A;  4D8E A;  1DKI A;  4D8I A;  3BBA A;  4RKX A;  3BB7 A;  2JTC A;  2UZJ A; 
#chains in the Genus database with same CATH topology
 2AVW A;  1EWM A;  5K16 A;  5CVM A;  1CSB B;  1CQD A;  3KFQ A;  4N79 A;  1PVJ A;  6PAD A;  8PCH A;  4QBB A;  2JTC A;  3OF9 A;  2JQG R;  4BQV A;  1CB5 A;  2AUZ A;  4IUM A;  1U2M A;  4MZS A;  3P5U A;  2JQF R;  1AU2 A;  3PBH A;  2BU3 A;  2CB5 A;  3PW3 A;  2P86 A;  3U8E A;  2IPP B;  2XU5 A;  3HWN A;  3KWB X;  1U9W A;  4W5B A;  3IMA A;  5J94 A;  2FRQ A;  4N8W A;  2AU1 A;  2FQ9 A;  2CIO A;  2G6D A;  1Y4H A;  4QRG A;  4MSX A;  5CVN B;  2AS8 A;  4ZTB A;  3O65 A;  3OVX A;  5CVO B;  1NL6 A;  1CJL A;  1CS8 A;  1AIM A;  1YK7 A;  4RNA A;  1GEC E;  3IFU A;  4PAD A;  2R6N A;  4P6E A;  2PNS A;  4OEM A;  1MEG A;  4CDF B;  3CH2 X;  4BOU A;  1K3B B;  2FO5 A;  4ZUX U;  3P5X A;  2HD5 A;  3ZNH A;  3MJ5 A;  3IUT A;  3S3R A;  3BB7 A;  3MHS A;  4FIP A;  2YJ8 A;  4G54 A;  3BY4 A;  1PXV A;  1O0E A;  1TU6 A;  5E6J A;  3QJ3 A;  2O6X A;  3PDF A;  3IEJ A;  3OIS A;  2HHN A;  3B21 A;  3WXG A;  4CDE B;  1ZCM A;  3I06 A;  1PPN A;  1A6R A;  4REZ A;  1CVZ A;  1GHH A;  4A5U A;  4OVZ B;  4OEL A;  2FYE A;  4YYV A;  4OW0 A;  1BY8 A;  5JA7 A;  1ITO A;  2DZZ A;  4D8E A;  2YJB A;  1PPP A;  4R3D A;  4W4U A;  2YJ2 A;  2R9N A;  2DCD A;  4Q8G A;  4AXL A;  2ACT A;  2OZ2 A;  2G8E A;  3LXS A;  1BQI A;  3BCN A;  3OQC A;  5EZQ A;  2OP3 A;  2ATO A;  1PAD A;  3GCB A;  4EVX A;  1QXP A;  4P6G A;  3ZUA A;  5CHT A;  4QH6 A;  1KXR A;  2G8J A;  1U9X A;  1EWO A;  1DKI A;  1Q6K A;  1EF7 A;  1KHP A;  3BOW A;  2DC8 A;  3TNX A;  2VHF A;  2HWK A;  1EWP A;  1VJV A;  2JRI A;  3TRK A;  4I05 A;  4BOZ A;  4X6I A;  2PRE A;  1STF E;  2P7U A;  3BWK A;  1PPD A;  1POP A;  2B1M A;  4WUR A;  4Q8H A;  3QSD A;  1KFX L;  3HD3 A;  1GCB A;  3KX1 A;  3I3T A;  1PE6 A;  1CPJ A;  2BTW B;  2DC9 A;  9PAP A;  3KSE A;  1MEM A;  3PSE A;  3K8U A;  2NQA A;  3HHI A;  4RY2 A;  2F7D A;  3H8B A;  3N4C A;  5JH3 A;  4GUA A;  1AU3 A;  4PT5 A;  1AU4 A;  2P0R A;  3PT2 A;  4K7C A;  4HXD B;  3W30 A;  2FRA A;  2H7J A;  3H89 A;  1GMY A;  4W5C A;  3AI8 A;  3C0R A;  5EGW A;  4WA6 A;  3KW9 A;  1CTE A;  2J7Q A;  1SP4 B;  3H8C A;  2DC7 A;  4BOQ A;  3RVW A;  3BPF A;  4RF0 A;  3MP2 A;  3WXE A;  4MZO A;  1F29 A;  4BS5 A;  1BP4 A;  1SNK A;  5JZE A;  2YJ9 A;  1HUC B;  4RF1 A;  4KQT A;  4I04 A;  3O0U A;  1NLJ A;  3MHH A;  1KHQ A;  4PP2 E;  2BDZ A;  5PAD A;  4YYW A;  3WXF A;  3CBK A;  3RVX A;  3S3Q A;  2XU1 A;  1QDQ A;  4YYS A;  1AEC A;  4YYU A;  3F5V A;  5A24 A;  3PNR A;  4CDD B;  4PP1 A;  2Y5B A;  3ERV A;  1QOL A;  1PIP A;  1ME4 A;  4BS6 A;  1ATK A;  3D6S A;  4YVA A;  5KO3 A;  4QRV A;  1DEU A;  1TLO A;  1KFU L;  3IV2 A;  2E01 A;  1DF0 A;  1UKF A;  2R9O A;  1AYV A;  3IHP A;  2VHS A;  2WBF X;  4XUI A;  1NQC A;  4BSQ A;  2DOS A;  4FJC A;  2DJF B;  2AGA A;  4D8I A;  1IWD A;  5FPW A;  2R9M A;  3PHU A;  5CHV A;  3USV A;  2PBH A;  4DMY A;  1XKG A;  2XU3 A;  2FTD A;  3HHA A;  4DMX A;  1MS6 A;  2GHU A;  2FE8 A;  1YT7 A;  1GLO A;  3MOR A;  2HXZ A;  2NQI A;  1NB3 A;  2J7Q C;  4HWY A;  3PHW A;  3BPM A;  3E1Z B;  4D8B A;  2DJG B;  4BOS A;  2HH5 A;  2DZY A;  3O1G A;  2F1G A;  1MIR A;  2XU4 A;  4M0W A;  1F2C A;  4OVZ A;  3RVV A;  1ME3 A;  3MTN A;  2DC6 A;  2IBI A;  3CBJ A;  3P5V A;  3OVZ A;  4X6H A;  2DCA A;  1JQP A;  1MDW A;  1QMY A;  4RKX A;  3DF0 A;  3NHE A;  2GFO A;  3H7D A;  1F2A A;  3N3G A;  4CZW A;  4P16 A;  2Z84 A;  3M99 A;  2AUX A;  3CH3 X;  1YVB A;  2R9F A;  2C0Y A;  1PPO A;  2BDL A;  4AXM A;  4KLB A;  1AYW A;  1F2B A;  4X6J A;  3P5W A;  2AIM A;  1SG2 A;  2FT2 A;  1NB5 A;  2E02 A;  1AYU A;  1Y08 A;  4YYR A;  4I07 A;  1TL9 A;  3KWZ A;  3BBA A;  2OUL A;  3PRM A;  4MI7 A;  1YAL A;  1U9Q X;  3C9E A;  1PBH A;  5EZS A;  1U9V A;  1ICF A;  2DCC A;  4XR7 A;  3LFY A;  3QT4 A;  2G7Y A;  3PHX A;  3V6C A;  4QRX A;  3TMP A;  4IP3 A;  2NQG A;  2Y6E A;  2E00 A;  1FH0 A;  1THE A;  4YV8 A;  4CDC B;  3RNV A;  5F02 A;  1YZB A;  2AYO A;  4MM3 B;  1U5I A;  1AU0 A;  3MTV A;  4XZX A;  1MHW A;  3BC3 A;  3PRP A;  3OF8 A;  1X9Y A;  1PCI A;  2BTW A;  3B79 A;  1CV8 A;  2AYN A;  1ZIV A;  3IOQ A;  3H6S A;  3W31 A;  5EF4 A;  1BGO A;  2PAD A;  3N3K A;  4FK5 A;  4BOP A;  2ARY A;  3V6E A;  2UZJ A;  7PCK A;  4BPV A;  4N4Z A;  1VSN A;  2R9C A;  2B1N A;  3K24 A;  2FUD A;  1YK8 A;  3KKU A;  3F75 A;  1NPZ A;  2YJC A;  3E9S A;  1M6D A;  3K9M A;  4PI3 A;  1EWL A;  2DCB A;  2NQD B;  2E03 A;  4YYQ A;  1S4V A; 
#chains in the Genus database with same CATH homology
 4A5U A;  3C0R A;  4RKX A;  4OVZ B;  2J7Q A;  1PVJ A;  4BOQ A;  4OW0 A;  2JTC A;  4P16 A;  4RF0 A;  2Z84 A;  4IUM A;  3MP2 A;  4D8E A;  4R3D A;  5JZE A;  4RF1 A;  2BU3 A;  3BBA A;  3PRM A;  3OQC A;  4MI7 A;  5EZS A;  5EZQ A;  4EVX A;  3PHX A;  4ZTB A;  5KO3 A;  3O65 A;  3TMP A;  4IP3 A;  1DKI A;  1UKF A;  3RNV A;  1YZB A;  2DOS A;  4MM3 B;  4RNA A;  2AGA A;  4D8I A;  3MTV A;  4XZX A;  3IFU A;  3PHU A;  3PRP A;  2HWK A;  2JRI A;  2BTW A;  2FE8 A;  3TRK A;  4BOZ A;  4BOU A;  3W31 A;  2J7Q C;  4WUR A;  4BOP A;  3PHW A;  2UZJ A;  2BTW B;  3ZNH A;  4D8B A;  3MJ5 A;  3BB7 A;  4BOS A;  3PSE A;  3BY4 A;  5E6J A;  4M0W A;  3E9S A;  4OVZ A;  4GUA A;  3B21 A;  4PT5 A;  3PT2 A;  4HXD B;  3W30 A;  4REZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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