3BB7A

Structure of prevotella intermedia prointerpain a fragment 39-359 (mutant c154a)
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
321
structure length
314
Chain Sequence
ANQLRELKQTHTYTVFGYTDGGFAVISADDLAPELLGVSESNFVETDNPSFKWWLKAIDEVITNAVKSNKPLNVIKPDPSKYAAEVSTLLTTTWGQQMPYNKLLPKTKKGRLITGAVATATAQVLNYFKYPVRGIGSHTVHYPANDPSGVAISADFGNTTYDWANMKDNYSGNYTEAEANAVATLMLHCGVASEMQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRANYTDEQWMDIVFSELTKGHPLIYGGVDAGHAFVIDGYNKAGLVSVNWGWNGDVDGYYKIDLLNPGNMYSFTAEQDMVRGVYGKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Prevotella intermedia
publication title A New Autocatalytic Activation Mechanism for Cysteine Proteases Revealed by Prevotella intermedia Interpain A
pubmed doi rcsb
molecule keywords interpain A
total genus 89
structure length 314
sequence length 321
ec nomenclature
pdb deposition date 2007-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.910.30 Alpha Beta 2-Layer Sandwich Protein Binding, DinI Protein; Chain A Protein Binding, DinI Protein; Chain A 3bb7A02
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3bb7A01
4D8EA 2UZJA 1PVJA 3BBAA 1DKIA 4RKXA 4D8IA 4D8BA 3BB7A 2JTCA
chains in the Genus database with same CATH superfamily
4ZUXU 1CQDA 3KFQA 1S4VA 3V6EA 1AU4A 5EZSA 4X6IA 1DKIA 2GFOA 3CBKA 2NQGA 1SP4B 2PNSA 4W5BA 2OZ2A 4W5CA 4YYRA 1X9YA 2FE8A 3F75A 4FJCA 3P5WA 3K24A 2OULA 1EWPA 1QMYA 2IBIA 2XU3A 3ZUAA 4PT5A 1CVZA 9PAPA 5EZQA 2E00A 3BC3A 2UZJA 2R9OA 4QRXA 4ZTBA 3KKUA 4Q8HA 1VSNA 4BS5A 1BY8A 3DF0A 2HHNA 3BPMA 3P5VA 3RVWA 1XKGA 2CIOA 2JRIA 1GCBA 1CV8A 2DZYA 2HH5A 3MP2A 2JQFR 1KFUL 1PPNA 4I05A 1YK8A 2BTWA 3H6SA 1NLJA 1AU2A 2AYOA 2YJBA 4M0WA 2E01A 4CDDB 2ATOA 3PHUA 4PP1A 2R9CA 1CJLA 4MM3B 2HD5A 3P5UA 1PXVA 3AI8A 1THEA 1MEGA 4DMXA 3ERVA 2XU4A 4AXMA 2FUDA 2J7QA 1JQPA 1PVJA 4I07A 1FH0A 1CSBB 4YVAA 2DCBA 5CVOB 1NL6A 4OVZB 1F2BA 1MDWA 2J7QC 4G54A 1AYUA 1AYWA 1CPJA 2DZZA 3RVVA 3IEJA 4PI3A 2Z84A 2E03A 3B79A 3PHWA 4RY2A 3WXFA 2CB5A 4KQTA 2BDZA 1KFXL 4MSXA 4YYSA 2JTCA 1ZCMA 4D8EA 2BU3A 3BBAA 4QRGA 3QSDA 1BQIA 2FRAA 4K7CA 2AYNA 2AVWA 1U9WA 3QT4A 1EF7A 1HUCB 1TLOA 3PSEA 4QH6A 4BOSA 3RNVA 4D8BA 1POPA 1EWLA 3V6CA 2ACTA 1U5IA 2G8JA 3MJ5A 1ZIVA 1Y4HA 4IP3A 5JA7A 1YK7A 1F2CA 2AGAA 1ATKA 4BOUA 1GMYA 1EWOA 1CTEA 4DMYA 3WXEA 2FQ9A 3C0RA 3KWBX 1QDQA 4N8WA 5FPWA 3W31A 3QJ3A 4OW0A 4CDCB 1AYVA 2Y5BA 3OVXA 2FRQA 2G8EA 2VHSA 3KWZA 2YJCA 5J94A 4MZOA 2NQDB 1TL9A 3MHSA 1IWDA 1QOLA 4RF0A 3OISA 3LXSA 3MORA 3E9SA 1AU3A 2BTWB 4FK5A 4CDEB 2AU1A 4I04A 3N3KA 2HWKA 1NQCA 2R9FA 1U2MA 2E02A 5F02A 1NB5A 2AS8A 1GECE 3PRPA 2YJ2A 3BPFA 2AUZA 3I3TA 2AIMA 1SG2A 1SNKA 1MS6A 2AUXA 2DC6A 4CDFB 3K9MA 1TU6A 2DCCA 3IFUA 2DC9A 1YVBA 1F29A 2YJ9A 3N3GA 3IOQA 1STFE 6PADA 2XU5A 1U9VA 4WA6A 2B1NA 2FO5A 3TNXA 4YYVA 3OQCA 1NB3A 3I06A 2ARYA 1ICFA 5CVNB 3S3QA 2PBHA 3BCNA 3O0UA 3CH2X 2DJGB 1VJVA 4X6JA 3CBJA 3MHHA 3PBHA 2YJ8A 5JH3A 2DCAA 4MI7A 1CB5A 3PNRA 3GCBA 2DCDA 1CS8A 2PREA 2G6DA 3WXGA 3HHAA 3RVXA 4BOZA 1DEUA 1ME3A 3OVZA 1YALA 1F2AA 7PCKA 4QRVA 4OELA 3OF8A 2JQGR 1KHQA 4BSQA 5E6JA 3M99A 3IV2A 2DC8A 2PADA 3O65A 2FT2A 3HD3A 4BOPA 4YYQA 4XUIA 4OVZA 2FYEA 2IPPB 1PPOA 1AIMA 3HHIA 4A5UA 5PADA 3S3RA 2P7UA 3BOWA 4P16A 3CH3X 2B1MA 4YV8A 3BWKA 1PADA 2G7YA 3KW9A 2C0YA 4WURA 4P6EA 1KXRA 2GHUA 1K3BB 1Y08A 4R3DA 1QXPA 4CZWA 3B21A 4HXDB 2OP3A 2R9MA 1GLOA 2P0RA 1PE6A 3K8UA 2DJFB 3H8BA 4HWYA 4YYWA 3PT2A 4P6GA 4BOQA 2R6NA 1AU0A 1EWMA 2Y6EA 1A6RA 3OF9A 1NPZA 3LFYA 4D8IA 3N4CA 3USVA 3TMPA 1Q6KA 1M6DA 4XR7A 2VHFA 1O0EA 3IHPA 5A24A 3ZNHA 4X6HA 4IUMA 1UKFA 1PIPA 4RKXA 2F1GA 5CVMA 3D6SA 4YYUA 4QBBA 1PPPA 3MTNA 4REZA 1YT7A 3MTVA 5JZEA 5CHTA 2P86A 8PCHA 1U9QX 2F7DA 2HXZA 4RF1A 2WBFX 3KSEA 1MIRA 1U9XA 3F5VA 4MZSA 2H7JA 1ME4A 5EF4A 5EGWA 4FIPA 3H7DA 1PBHA 3BY4A 3H89A 3H8CA 3NHEA 3HWNA 1KHPA 2O6XA 2FTDA 1BP4A 5K16A 1DF0A 3IUTA 3TRKA 3W30A 4BQVA 2BDLA 1ITOA 2DC7A 4Q8GA 1MEMA 4AXLA 1PCIA 4KLBA 3PHXA 1YZBA 5CHVA 2NQIA 3C9EA 4PADA 1BGOA 4GUAA 4OEMA 3P5XA 5KO3A 3PW3A 3KX1A 1PPDA 1GHHA 2XU1A 3E1ZB 3PDFA 3BB7A 1MHWA 4BPVA 1AECA 4RNAA 3IMAA 3PRMA 4W4UA 2NQAA 4EVXA 4N79A 2R9NA 4N4ZA 4XZXA 3O1GA 3U8EA 4PP2E 4BS6A 2DOSA
chains in the Genus database with same CATH topology
4D8EA 2BU3A 3BBAA 3OQCA 5EZSA 1DKIA 3ZNHA 4IUMA 1UKFA 4RKXA 4REZA 4MI7A 2FE8A 3PSEA 4BOSA 3RNVA 3MTVA 5JZEA 4D8BA 4PT5A 3MJ5A 5EZQA 4IP3A 4BOZA 2AGAA 4RF1A 2UZJA 4BOUA 4ZTBA 3C0RA 5E6JA 3W31A 3BY4A 4OW0A 2JRIA 3O65A 4BOPA 4OVZA 4A5UA 3MP2A 3TRKA 3W30A 2BTWA 4P16A 4RF0A 4M0WA 3E9SA 4WURA 3PHUA 4MM3B 4R3DA 2BTWB 3PHXA 1YZBA 3B21A 4HXDB 2HWKA 4GUAA 2J7QA 5KO3A 3PT2A 1PVJA 4BOQA 3PRPA 4OVZB 2J7QC 3BB7A 3IFUA 2Z84A 3PHWA 4RNAA 3PRMA 4EVXA 4XZXA 4D8IA 2DOSA 2JTCA 3TMPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D8E A;  2UZJ A;  1PVJ A;  3BBA A;  1DKI A;  4RKX A;  4D8I A;  4D8B A;  3BB7 A;  2JTC A; 
#chains in the Genus database with same CATH topology
 4ZUX U;  1CQD A;  3KFQ A;  1S4V A;  3V6E A;  1AU4 A;  5EZS A;  4X6I A;  1DKI A;  2GFO A;  3CBK A;  2NQG A;  1SP4 B;  2PNS A;  4W5B A;  2OZ2 A;  4W5C A;  4YYR A;  1X9Y A;  2FE8 A;  3F75 A;  4FJC A;  3P5W A;  3K24 A;  2OUL A;  1EWP A;  1QMY A;  2IBI A;  2XU3 A;  3ZUA A;  4PT5 A;  1CVZ A;  9PAP A;  5EZQ A;  2E00 A;  3BC3 A;  2UZJ A;  2R9O A;  4QRX A;  4ZTB A;  3KKU A;  4Q8H A;  1VSN A;  4BS5 A;  1BY8 A;  3DF0 A;  2HHN A;  3BPM A;  3P5V A;  3RVW A;  1XKG A;  2CIO A;  2JRI A;  1GCB A;  1CV8 A;  2DZY A;  2HH5 A;  3MP2 A;  2JQF R;  1KFU L;  1PPN A;  4I05 A;  1YK8 A;  2BTW A;  3H6S A;  1NLJ A;  1AU2 A;  2AYO A;  2YJB A;  4M0W A;  2E01 A;  4CDD B;  2ATO A;  3PHU A;  4PP1 A;  2R9C A;  1CJL A;  4MM3 B;  2HD5 A;  3P5U A;  1PXV A;  3AI8 A;  1THE A;  1MEG A;  4DMX A;  3ERV A;  2XU4 A;  4AXM A;  2FUD A;  2J7Q A;  1JQP A;  1PVJ A;  4I07 A;  1FH0 A;  1CSB B;  4YVA A;  2DCB A;  5CVO B;  1NL6 A;  4OVZ B;  1F2B A;  1MDW A;  2J7Q C;  4G54 A;  1AYU A;  1AYW A;  1CPJ A;  2DZZ A;  3RVV A;  3IEJ A;  4PI3 A;  2Z84 A;  2E03 A;  3B79 A;  3PHW A;  4RY2 A;  3WXF A;  2CB5 A;  4KQT A;  2BDZ A;  1KFX L;  4MSX A;  4YYS A;  2JTC A;  1ZCM A;  4D8E A;  2BU3 A;  3BBA A;  4QRG A;  3QSD A;  1BQI A;  2FRA A;  4K7C A;  2AYN A;  2AVW A;  1U9W A;  3QT4 A;  1EF7 A;  1HUC B;  1TLO A;  3PSE A;  4QH6 A;  4BOS A;  3RNV A;  4D8B A;  1POP A;  1EWL A;  3V6C A;  2ACT A;  1U5I A;  2G8J A;  3MJ5 A;  1ZIV A;  1Y4H A;  4IP3 A;  5JA7 A;  1YK7 A;  1F2C A;  2AGA A;  1ATK A;  4BOU A;  1GMY A;  1EWO A;  1CTE A;  4DMY A;  3WXE A;  2FQ9 A;  3C0R A;  3KWB X;  1QDQ A;  4N8W A;  5FPW A;  3W31 A;  3QJ3 A;  4OW0 A;  4CDC B;  1AYV A;  2Y5B A;  3OVX A;  2FRQ A;  2G8E A;  2VHS A;  3KWZ A;  2YJC A;  5J94 A;  4MZO A;  2NQD B;  1TL9 A;  3MHS A;  1IWD A;  1QOL A;  4RF0 A;  3OIS A;  3LXS A;  3MOR A;  3E9S A;  1AU3 A;  2BTW B;  4FK5 A;  4CDE B;  2AU1 A;  4I04 A;  3N3K A;  2HWK A;  1NQC A;  2R9F A;  1U2M A;  2E02 A;  5F02 A;  1NB5 A;  2AS8 A;  1GEC E;  3PRP A;  2YJ2 A;  3BPF A;  2AUZ A;  3I3T A;  2AIM A;  1SG2 A;  1SNK A;  1MS6 A;  2AUX A;  2DC6 A;  4CDF B;  3K9M A;  1TU6 A;  2DCC A;  3IFU A;  2DC9 A;  1YVB A;  1F29 A;  2YJ9 A;  3N3G A;  3IOQ A;  1STF E;  6PAD A;  2XU5 A;  1U9V A;  4WA6 A;  2B1N A;  2FO5 A;  3TNX A;  4YYV A;  3OQC A;  1NB3 A;  3I06 A;  2ARY A;  1ICF A;  5CVN B;  3S3Q A;  2PBH A;  3BCN A;  3O0U A;  3CH2 X;  2DJG B;  1VJV A;  4X6J A;  3CBJ A;  3MHH A;  3PBH A;  2YJ8 A;  5JH3 A;  2DCA A;  4MI7 A;  1CB5 A;  3PNR A;  3GCB A;  2DCD A;  1CS8 A;  2PRE A;  2G6D A;  3WXG A;  3HHA A;  3RVX A;  4BOZ A;  1DEU A;  1ME3 A;  3OVZ A;  1YAL A;  1F2A A;  7PCK A;  4QRV A;  4OEL A;  3OF8 A;  2JQG R;  1KHQ A;  4BSQ A;  5E6J A;  3M99 A;  3IV2 A;  2DC8 A;  2PAD A;  3O65 A;  2FT2 A;  3HD3 A;  4BOP A;  4YYQ A;  4XUI A;  4OVZ A;  2FYE A;  2IPP B;  1PPO A;  1AIM A;  3HHI A;  4A5U A;  5PAD A;  3S3R A;  2P7U A;  3BOW A;  4P16 A;  3CH3 X;  2B1M A;  4YV8 A;  3BWK A;  1PAD A;  2G7Y A;  3KW9 A;  2C0Y A;  4WUR A;  4P6E A;  1KXR A;  2GHU A;  1K3B B;  1Y08 A;  4R3D A;  1QXP A;  4CZW A;  3B21 A;  4HXD B;  2OP3 A;  2R9M A;  1GLO A;  2P0R A;  1PE6 A;  3K8U A;  2DJF B;  3H8B A;  4HWY A;  4YYW A;  3PT2 A;  4P6G A;  4BOQ A;  2R6N A;  1AU0 A;  1EWM A;  2Y6E A;  1A6R A;  3OF9 A;  1NPZ A;  3LFY A;  4D8I A;  3N4C A;  3USV A;  3TMP A;  1Q6K A;  1M6D A;  4XR7 A;  2VHF A;  1O0E A;  3IHP A;  5A24 A;  3ZNH A;  4X6H A;  4IUM A;  1UKF A;  1PIP A;  4RKX A;  2F1G A;  5CVM A;  3D6S A;  4YYU A;  4QBB A;  1PPP A;  3MTN A;  4REZ A;  1YT7 A;  3MTV A;  5JZE A;  5CHT A;  2P86 A;  8PCH A;  1U9Q X;  2F7D A;  2HXZ A;  4RF1 A;  2WBF X;  3KSE A;  1MIR A;  1U9X A;  3F5V A;  4MZS A;  2H7J A;  1ME4 A;  5EF4 A;  5EGW A;  4FIP A;  3H7D A;  1PBH A;  3BY4 A;  3H89 A;  3H8C A;  3NHE A;  3HWN A;  1KHP A;  2O6X A;  2FTD A;  1BP4 A;  5K16 A;  1DF0 A;  3IUT A;  3TRK A;  3W30 A;  4BQV A;  2BDL A;  1ITO A;  2DC7 A;  4Q8G A;  1MEM A;  4AXL A;  1PCI A;  4KLB A;  3PHX A;  1YZB A;  5CHV A;  2NQI A;  3C9E A;  4PAD A;  1BGO A;  4GUA A;  4OEM A;  3P5X A;  5KO3 A;  3PW3 A;  3KX1 A;  1PPD A;  1GHH A;  2XU1 A;  3E1Z B;  3PDF A;  3BB7 A;  1MHW A;  4BPV A;  1AEC A;  4RNA A;  3IMA A;  3PRM A;  4W4U A;  2NQA A;  4EVX A;  4N79 A;  2R9N A;  4N4Z A;  4XZX A;  3O1G A;  3U8E A;  4PP2 E;  4BS6 A;  2DOS A; 
#chains in the Genus database with same CATH homology
 4D8E A;  2BU3 A;  3BBA A;  3OQC A;  5EZS A;  1DKI A;  3ZNH A;  4IUM A;  1UKF A;  4RKX A;  4REZ A;  4MI7 A;  2FE8 A;  3PSE A;  4BOS A;  3RNV A;  3MTV A;  5JZE A;  4D8B A;  4PT5 A;  3MJ5 A;  5EZQ A;  4IP3 A;  4BOZ A;  2AGA A;  4RF1 A;  2UZJ A;  4BOU A;  4ZTB A;  3C0R A;  5E6J A;  3W31 A;  3BY4 A;  4OW0 A;  2JRI A;  3O65 A;  4BOP A;  4OVZ A;  4A5U A;  3MP2 A;  3TRK A;  3W30 A;  2BTW A;  4P16 A;  4RF0 A;  4M0W A;  3E9S A;  4WUR A;  3PHU A;  4MM3 B;  4R3D A;  2BTW B;  3PHX A;  1YZB A;  3B21 A;  4HXD B;  2HWK A;  4GUA A;  2J7Q A;  5KO3 A;  3PT2 A;  1PVJ A;  4BOQ A;  3PRP A;  4OVZ B;  2J7Q C;  3BB7 A;  3IFU A;  2Z84 A;  3PHW A;  4RNA A;  3PRM A;  4EVX A;  4XZX A;  4D8I A;  2DOS A;  2JTC A;  3TMP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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