1TD4A

Crystal structure of vshp_bpp21 in space group h3 with high resolution.
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
103
structure length
102
Chain Sequence
VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPEVDEHKKANAFAGSALSHAALP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
source organism Enterobacteria phage p21
publication title Kinetic Stability and Crystal Structure of the Viral Capsid Protein SHP.
pubmed doi rcsb
molecule keywords Head decoration protein
total genus 18
structure length 102
sequence length 103
ec nomenclature
pdb deposition date 2004-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02924 HDPD Bacteriophage lambda head decoration protein D
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.300.10 Mainly Beta Beta Barrel Virus Head Decoration Protein; Chain: A, Head decoration protein D 1td4A00
3GQKA 3SUCA 1TD3A 1TD4A 3GQHA 1TD0A 1VD0A 1C5EA 1TCZA
chains in the Genus database with same CATH superfamily
3GQKA 3SUCA 1TD3A 1TD4A 3GQHA 1TD0A 1VD0A 1C5EA 1TCZA
chains in the Genus database with same CATH topology
3GQKA 3SUCA 1TD3A 1TD4A 3GQHA 1TD0A 1VD0A 1C5EA 1TCZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GQK A;  3SUC A;  1TD3 A;  1TD4 A;  3GQH A;  1TD0 A;  1VD0 A;  1C5E A;  1TCZ A; 
#chains in the Genus database with same CATH topology
 3GQK A;  3SUC A;  1TD3 A;  1TD4 A;  3GQH A;  1TD0 A;  1VD0 A;  1C5E A;  1TCZ A; 
#chains in the Genus database with same CATH homology
 3GQK A;  3SUC A;  1TD3 A;  1TD4 A;  3GQH A;  1TD0 A;  1VD0 A;  1C5E A;  1TCZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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