1YBZ | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	76
structure length	76
Chain Sequence	GSTTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGEFREIFEKILEVSKDVQR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 76 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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76 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001 rcsb
molecule keywords	chorismate mutase
molecule tags	Isomerase
source organism	Pyrococcus furiosus
total genus	31
structure length	76
sequence length	76
ec nomenclature	ec 5.4.99.5: Chorismate mutase.
pdb deposition date	2004-12-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01817	CM_2	Chorismate mutase type II

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.59.10	Mainly Alpha	Up-down Bundle	Chorismate Mutase Domain, subunit A	Chorismate mutase	1ybzA00

5CKXC 2H9DA 3NVTA 3RETA 3HGWA 1YBZA 3REMA 2D8EA 2H9CA 2VKLA 3HGXA 2QBVA 2W19C 2W1AC 3RMIA 3TFCA 1ECMA 2GTVX 2D8DA
chains in the Genus database with same CATH superfamily

5CKXC 2H9DA 3NVTA 3RETA 3HGWA 1YBZA 2E21A 3REMA 2D8EA 2H9CA 2E89A 2VKLA 3HGXA 2QBVA 1WY5A 2W19C 2W1AC 3RMIA 1NI5A 3A2KA 3TFCA 1ECMA 2GTVX 2D8DA
chains in the Genus database with same CATH topology

5CKXC 2H9DA 3NVTA 3RETA 3HGWA 1YBZA 3REMA 2D8EA 2H9CA 2VKLA 3HGXA 2QBVA 2W19C 2W1AC 3RMIA 3TFCA 1ECMA 2GTVX 2D8DA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5CKX C;  2H9D A;  3NVT A;  3RET A;  3HGW A;  1YBZ A;  3REM A;  2D8E A;  2H9C A;  2VKL A;  3HGX A;  2QBV A;  2W19 C;  2W1A C;  3RMI A;  3TFC A;  1ECM A;  2GTV X;  2D8D A; 
#chains in the Genus database with same CATH topology
 5CKX C;  2H9D A;  3NVT A;  3RET A;  3HGW A;  1YBZ A;  2E21 A;  3REM A;  2D8E A;  2H9C A;  2E89 A;  2VKL A;  3HGX A;  2QBV A;  1WY5 A;  2W19 C;  2W1A C;  3RMI A;  1NI5 A;  3A2K A;  3TFC A;  1ECM A;  2GTV X;  2D8D A; 
#chains in the Genus database with same CATH homology
 5CKX C;  2H9D A;  3NVT A;  3RET A;  3HGW A;  1YBZ A;  3REM A;  2D8E A;  2H9C A;  2VKL A;  3HGX A;  2QBV A;  2W19 C;  2W1A C;  3RMI A;  3TFC A;  1ECM A;  2GTV X;  2D8D A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1YBZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations