1EHKA

Crystal structure of the aberrant ba3-cytochrome-c oxidase from thermus thermophilus
Total Genus 220
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
220
sequence length
549
structure length
544
Chain Sequence
AYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVAALPLLANEATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRLAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHLNPVPGWRLW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure and mechanism of the aberrant ba(3)-cytochrome c oxidase from thermus thermophilus.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords BA3-TYPE CYTOCHROME-C OXIDASE
total genus 220
structure length 544
sequence length 549
ec nomenclature ec 1.9.3.1: Cytochrome-c oxidase.
pdb deposition date 2000-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome c oxidase-like, subunit I domain 1ehkA00
2OCCA 3FYIA 1EHKA 3QJQA 5B1AA 3AYFA 4G7QA 1QLEA 3EH3A 2ZXWA 2EINA 3S8FA 1OCCA 3OMNA 3DTUA 3QJRA 1XMEA 2EIKA 2DYSA 4GP5A 1OCOA 3EH5A 5B1BA 3AYGA 3O0RB 3X2QA 5B3SA 3OM3A 1AR1A 1OCZA 1OCRA 1M56A 3EHBA 3S3CA 2EIMA 2Y69A 4GP4A 3QJTA 4G7RA 1M57A 4G71A 3OMAA 2YEVA 2QPEA 3AG2A 3ABMA 4G72A 1V54A 3QJSA 4FAAA 5IY5A 3ABLA 3QJVA 3S3DA 2EIJA 3ABKA 2EILA 4FA7A 3ASOA 3WFBB 2DYRA 4XYDA 3AG4A 3AG1A 3OMIA 1FFTA 3BVDA 2QPDA 3AG3A 3FYEA 4GP8A 3WG7A 3S3BA 3QJUA 4N4YA 3WFEB 4G7SA 5DJQA 4G70A 3WFCB 3S8GA 3ASNA 1V55A 3MK7A 3EH4A 3WFDB 2GSMA 3HB3A
chains in the Genus database with same CATH superfamily
2OCCA 3FYIA 1EHKA 3QJQA 5B1AA 3AYFA 4G7QA 1QLEA 3EH3A 2ZXWA 2EINA 3S8FA 1OCCA 3OMNA 3DTUA 3QJRA 1XMEA 2EIKA 2DYSA 4GP5A 1OCOA 3EH5A 5B1BA 3AYGA 3O0RB 3X2QA 5B3SA 3OM3A 1AR1A 1OCZA 1OCRA 1M56A 3EHBA 3S3CA 2EIMA 2Y69A 4GP4A 3QJTA 4G7RA 1M57A 4G71A 3OMAA 2YEVA 2QPEA 3AG2A 3ABMA 4G72A 1V54A 3QJSA 4FAAA 5IY5A 3ABLA 3QJVA 3S3DA 2EIJA 3ABKA 2EILA 4FA7A 3ASOA 3WFBB 2DYRA 4XYDA 3AG4A 3AG1A 3OMIA 1FFTA 3BVDA 2QPDA 3AG3A 3FYEA 4GP8A 3WG7A 3S3BA 3QJUA 4N4YA 3WFEB 4G7SA 5DJQA 4G70A 3WFCB 3S8GA 3ASNA 1V55A 3MK7A 3EH4A 3WFDB 2GSMA 3HB3A
chains in the Genus database with same CATH topology
2OCCA 3FYIA 1EHKA 3QJQA 5B1AA 3AYFA 4G7QA 1QLEA 3EH3A 2ZXWA 2EINA 3S8FA 1OCCA 3OMNA 3DTUA 3QJRA 1XMEA 2EIKA 2DYSA 4GP5A 1OCOA 3EH5A 5B1BA 3AYGA 3O0RB 3X2QA 5B3SA 3OM3A 1AR1A 1OCZA 1OCRA 1M56A 3EHBA 3S3CA 2EIMA 2Y69A 4GP4A 3QJTA 4G7RA 1M57A 4G71A 3OMAA 2YEVA 2QPEA 3AG2A 3ABMA 4G72A 1V54A 3QJSA 4FAAA 5IY5A 3ABLA 3QJVA 3S3DA 2EIJA 3ABKA 2EILA 4FA7A 3ASOA 3WFBB 2DYRA 4XYDA 3AG4A 3AG1A 3OMIA 1FFTA 3BVDA 2QPDA 3AG3A 3FYEA 4GP8A 3WG7A 3S3BA 3QJUA 4N4YA 3WFEB 4G7SA 5DJQA 4G70A 3WFCB 3S8GA 3ASNA 1V55A 3MK7A 3EH4A 3WFDB 2GSMA 3HB3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OCC A;  3FYI A;  1EHK A;  3QJQ A;  5B1A A;  3AYF A;  4G7Q A;  1QLE A;  3EH3 A;  2ZXW A;  2EIN A;  3S8F A;  1OCC A;  3OMN A;  3DTU A;  3QJR A;  1XME A;  2EIK A;  2DYS A;  4GP5 A;  1OCO A;  3EH5 A;  5B1B A;  3AYG A;  3O0R B;  3X2Q A;  5B3S A;  3OM3 A;  1AR1 A;  1OCZ A;  1OCR A;  1M56 A;  3EHB A;  3S3C A;  2EIM A;  2Y69 A;  4GP4 A;  3QJT A;  4G7R A;  1M57 A;  4G71 A;  3OMA A;  2YEV A;  2QPE A;  3AG2 A;  3ABM A;  4G72 A;  1V54 A;  3QJS A;  4FAA A;  5IY5 A;  3ABL A;  3QJV A;  3S3D A;  2EIJ A;  3ABK A;  2EIL A;  4FA7 A;  3ASO A;  3WFB B;  2DYR A;  4XYD A;  3AG4 A;  3AG1 A;  3OMI A;  1FFT A;  3BVD A;  2QPD A;  3AG3 A;  3FYE A;  4GP8 A;  3WG7 A;  3S3B A;  3QJU A;  4N4Y A;  3WFE B;  4G7S A;  5DJQ A;  4G70 A;  3WFC B;  3S8G A;  3ASN A;  1V55 A;  3MK7 A;  3EH4 A;  3WFD B;  2GSM A;  3HB3 A; 
#chains in the Genus database with same CATH topology
 2OCC A;  3FYI A;  1EHK A;  3QJQ A;  5B1A A;  3AYF A;  4G7Q A;  1QLE A;  3EH3 A;  2ZXW A;  2EIN A;  3S8F A;  1OCC A;  3OMN A;  3DTU A;  3QJR A;  1XME A;  2EIK A;  2DYS A;  4GP5 A;  1OCO A;  3EH5 A;  5B1B A;  3AYG A;  3O0R B;  3X2Q A;  5B3S A;  3OM3 A;  1AR1 A;  1OCZ A;  1OCR A;  1M56 A;  3EHB A;  3S3C A;  2EIM A;  2Y69 A;  4GP4 A;  3QJT A;  4G7R A;  1M57 A;  4G71 A;  3OMA A;  2YEV A;  2QPE A;  3AG2 A;  3ABM A;  4G72 A;  1V54 A;  3QJS A;  4FAA A;  5IY5 A;  3ABL A;  3QJV A;  3S3D A;  2EIJ A;  3ABK A;  2EIL A;  4FA7 A;  3ASO A;  3WFB B;  2DYR A;  4XYD A;  3AG4 A;  3AG1 A;  3OMI A;  1FFT A;  3BVD A;  2QPD A;  3AG3 A;  3FYE A;  4GP8 A;  3WG7 A;  3S3B A;  3QJU A;  4N4Y A;  3WFE B;  4G7S A;  5DJQ A;  4G70 A;  3WFC B;  3S8G A;  3ASN A;  1V55 A;  3MK7 A;  3EH4 A;  3WFD B;  2GSM A;  3HB3 A; 
#chains in the Genus database with same CATH homology
 2OCC A;  3FYI A;  1EHK A;  3QJQ A;  5B1A A;  3AYF A;  4G7Q A;  1QLE A;  3EH3 A;  2ZXW A;  2EIN A;  3S8F A;  1OCC A;  3OMN A;  3DTU A;  3QJR A;  1XME A;  2EIK A;  2DYS A;  4GP5 A;  1OCO A;  3EH5 A;  5B1B A;  3AYG A;  3O0R B;  3X2Q A;  5B3S A;  3OM3 A;  1AR1 A;  1OCZ A;  1OCR A;  1M56 A;  3EHB A;  3S3C A;  2EIM A;  2Y69 A;  4GP4 A;  3QJT A;  4G7R A;  1M57 A;  4G71 A;  3OMA A;  2YEV A;  2QPE A;  3AG2 A;  3ABM A;  4G72 A;  1V54 A;  3QJS A;  4FAA A;  5IY5 A;  3ABL A;  3QJV A;  3S3D A;  2EIJ A;  3ABK A;  2EIL A;  4FA7 A;  3ASO A;  3WFB B;  2DYR A;  4XYD A;  3AG4 A;  3AG1 A;  3OMI A;  1FFT A;  3BVD A;  2QPD A;  3AG3 A;  3FYE A;  4GP8 A;  3WG7 A;  3S3B A;  3QJU A;  4N4Y A;  3WFE B;  4G7S A;  5DJQ A;  4G70 A;  3WFC B;  3S8G A;  3ASN A;  1V55 A;  3MK7 A;  3EH4 A;  3WFD B;  2GSM A;  3HB3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...