1NU1I

Crystal structure of mitochondrial cytochrome bc1 complexed with 2-nonyl-4-hydroxyquinoline n-oxide (nqno)
Total Genus 1
510152025303540455000.20.40.60.81
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
57
structure length
57
Chain Sequence
MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI2 (5-8)TIV1 (3-6)S1 (13-14)S2 (22-23)EMPTYO2 (24-68)TIV4 (29-32)TIV9 (41-44)TIV11 (48-51)TIV2 (16-19)Updating...
connected with : NaN
molecule tags Oxidoreductase
publication title Structural basis for the quinone reduction in the bc(1) complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc(1) with bound substrate and inhibitors at the Q(i) site
pubmed doi rcsb
molecule keywords Ubiquinol-cytochrome C reductase complex core protein I, mit
total genus 1
structure length 57
sequence length 57
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2003-01-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1nu1I00
1PPJI 1SQBI 3H1KI 3H1LI 1NTZI 3CWBI 1SQPI 1L0LI 1SQQI 1NTKI 3H1II 3L72I 2FYUI 3TGUI 1L0NI 3L70I 3H1HI 2A06I 3H1JI 1NTMI 3L73I 3L71I 1NU1I 1SQXI 3L75I 4U3FI 1PP9I 1SQVI 3L74I
chains in the Genus database with same CATH superfamily
1PPJI 1SQBI 3H1KI 3H1LI 1NTZI 3CWBI 1SQPI 1L0LI 1SQQI 1NTKI 3H1II 3L72I 2FYUI 3TGUI 1L0NI 3L70I 3H1HI 2A06I 3H1JI 1NTMI 3L73I 3L71I 1NU1I 1SQXI 3L75I 4U3FI 1PP9I 1SQVI 3L74I
chains in the Genus database with same CATH topology
1PPJI 1SQBI 3H1KI 3H1LI 1NTZI 3CWBI 1SQPI 1L0LI 1SQQI 1NTKI 3H1II 3L72I 2FYUI 3TGUI 1L0NI 3L70I 3H1HI 2A06I 3H1JI 1NTMI 3L73I 3L71I 1NU1I 1SQXI 3L75I 4U3FI 1PP9I 1SQVI 3L74I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PPJ I;  1SQB I;  3H1K I;  3H1L I;  1NTZ I;  3CWB I;  1SQP I;  1L0L I;  1SQQ I;  1NTK I;  3H1I I;  3L72 I;  2FYU I;  3TGU I;  1L0N I;  3L70 I;  3H1H I;  2A06 I;  3H1J I;  1NTM I;  3L73 I;  3L71 I;  1NU1 I;  1SQX I;  3L75 I;  4U3F I;  1PP9 I;  1SQV I;  3L74 I; 
#chains in the Genus database with same CATH topology
 1PPJ I;  1SQB I;  3H1K I;  3H1L I;  1NTZ I;  3CWB I;  1SQP I;  1L0L I;  1SQQ I;  1NTK I;  3H1I I;  3L72 I;  2FYU I;  3TGU I;  1L0N I;  3L70 I;  3H1H I;  2A06 I;  3H1J I;  1NTM I;  3L73 I;  3L71 I;  1NU1 I;  1SQX I;  3L75 I;  4U3F I;  1PP9 I;  1SQV I;  3L74 I; 
#chains in the Genus database with same CATH homology
 1PPJ I;  1SQB I;  3H1K I;  3H1L I;  1NTZ I;  3CWB I;  1SQP I;  1L0L I;  1SQQ I;  1NTK I;  3H1I I;  3L72 I;  2FYU I;  3TGU I;  1L0N I;  3L70 I;  3H1H I;  2A06 I;  3H1J I;  1NTM I;  3L73 I;  3L71 I;  1NU1 I;  1SQX I;  3L75 I;  4U3F I;  1PP9 I;  1SQV I;  3L74 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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