1SQBI

Crystal structure analysis of bovine bc1 with azoxystrobin
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
57
structure length
57
Chain Sequence
MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Crystallographic studies of quinol oxidation site inhibitors: a modified classification of inhibitors for the cytochrome bc(1) complex
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Ubiquinol-cytochrome C reductase complex core protein I, mit
total genus 2
structure length 57
sequence length 57
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2004-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF09165 Ubiq-Cytc-red_N Ubiquinol-cytochrome c reductase 8 kDa, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 1sqbI00
3H1II 1PP9I 3L74I 2FYUI 3L75I 3L70I 3L72I 1L0NI 4U3FI 2A06I 3L73I 1PPJI 3CWBI 3H1KI 1NU1I 3L71I 3H1LI 1SQVI 1SQPI 1SQQI 1SQXI 3H1JI 3H1HI 1NTMI 3TGUI 1NTKI 1NTZI 1SQBI 1L0LI
chains in the Genus database with same CATH superfamily
3H1II 1PP9I 3L74I 2FYUI 3L75I 3L70I 3L72I 1L0NI 4U3FI 2A06I 3L73I 1PPJI 3CWBI 3H1KI 1NU1I 3L71I 3H1LI 1SQVI 1SQPI 1SQQI 1SQXI 3H1JI 3H1HI 1NTMI 3TGUI 1NTKI 1NTZI 1SQBI 1L0LI
chains in the Genus database with same CATH topology
3H1II 1PP9I 3L74I 2FYUI 3L75I 3L70I 3L72I 1L0NI 4U3FI 2A06I 3L73I 1PPJI 3CWBI 3H1KI 1NU1I 3L71I 3H1LI 1SQVI 1SQPI 1SQQI 1SQXI 3H1JI 3H1HI 1NTMI 3TGUI 1NTKI 1NTZI 1SQBI 1L0LI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3H1I I;  1PP9 I;  3L74 I;  2FYU I;  3L75 I;  3L70 I;  3L72 I;  1L0N I;  4U3F I;  2A06 I;  3L73 I;  1PPJ I;  3CWB I;  3H1K I;  1NU1 I;  3L71 I;  3H1L I;  1SQV I;  1SQP I;  1SQQ I;  1SQX I;  3H1J I;  3H1H I;  1NTM I;  3TGU I;  1NTK I;  1NTZ I;  1SQB I;  1L0L I; 
#chains in the Genus database with same CATH topology
 3H1I I;  1PP9 I;  3L74 I;  2FYU I;  3L75 I;  3L70 I;  3L72 I;  1L0N I;  4U3F I;  2A06 I;  3L73 I;  1PPJ I;  3CWB I;  3H1K I;  1NU1 I;  3L71 I;  3H1L I;  1SQV I;  1SQP I;  1SQQ I;  1SQX I;  3H1J I;  3H1H I;  1NTM I;  3TGU I;  1NTK I;  1NTZ I;  1SQB I;  1L0L I; 
#chains in the Genus database with same CATH homology
 3H1I I;  1PP9 I;  3L74 I;  2FYU I;  3L75 I;  3L70 I;  3L72 I;  1L0N I;  4U3F I;  2A06 I;  3L73 I;  1PPJ I;  3CWB I;  3H1K I;  1NU1 I;  3L71 I;  3H1L I;  1SQV I;  1SQP I;  1SQQ I;  1SQX I;  3H1J I;  3H1H I;  1NTM I;  3TGU I;  1NTK I;  1NTZ I;  1SQB I;  1L0L I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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