The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
57
|
sequence length |
280
|
structure length |
280
|
Chain Sequence |
SLGSDADSAGSLIQPMQIPGIIMPGLRRLTIRDLLAQGRTSSNALEYVREEVFTNNADVVAEKALKPESDITFSKQTANVKTIAHWVQASRQVMDDAPMLQSYINNRLMYGLALKEEGQLLNGDGTGDNLEGLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFGGPQAFTSNIMWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFSS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Capsid Conformational Sampling in HK97 Maturation Visualized by X-Ray Crystallography and Cryo-EM.
pubmed doi rcsb |
| molecule tags |
Virus
|
| source organism |
Enterobacteria phage hk97
|
| molecule keywords |
major capsid protein
|
| total genus |
57
|
| structure length |
280
|
| sequence length |
280
|
| chains with identical sequence |
B, C, D, E, F, G
|
| ec nomenclature | |
| pdb deposition date | 2006-01-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05065 | Phage_capsid | Phage capsid family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | hypothetical protein PF0899 domain | ||
| Alpha Beta | 2-Layer Sandwich | Major capsid protein gp5 fold | Major capsid protein gp5 |
#chains in the Genus database with same CATH superfamily 2E0Z A; 1OHG A; 2FT1 A; 2PK8 A; 3DKT A; 3E8K A; 2FSY A; #chains in the Genus database with same CATH topology 5AUO A; 2PK8 A; 2LC0 A; 3A43 A; 3V6I A; 2FSY A; 2E0Z A; 2DMA A; 1OHG A; 3E8K A; 1YUE A; 4DT0 A; 1QU3 A; 3A44 A; 3K5B A; 4DL0 E; 2DM9 A; 5AUN A; 4EFA E; 2KDX A; 2FT1 A; 3DKT A; 1WZ2 A; 5AUP A; #chains in the Genus database with same CATH homology 2E0Z A; 1OHG A; 2FT1 A; 2PK8 A; 3DKT A; 3E8K A; 2FSY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
