2GTV | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	104
structure length	104
Chain Sequence	MIEKLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIFQRLIEHNKALQKQYLEETLEH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 104 atoms

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104 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure and dynamics of a molten globular enzyme. pubmed doi rcsb
molecule keywords	chorismate mutase
molecule tags	Isomerase
source organism	Methanocaldococcus jannaschii
total genus	33
structure length	104
sequence length	104
ec nomenclature	ec 5.4.99.5: Chorismate mutase.
pdb deposition date	2006-04-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF01817	CM_2	Chorismate mutase type II

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.59.10	Mainly Alpha	Up-down Bundle	Chorismate Mutase Domain, subunit A	Chorismate mutase	2gtvX00

3RETA 3REMA 5CKXC 2W1AC 3HGXA 2VKLA 3NVTA 3HGWA 1ECMA 2W19C 2QBVA 2H9DA 3RMIA 2H9CA 2D8EA 2D8DA 2GTVX 1YBZA 3TFCA
chains in the Genus database with same CATH superfamily

1NI5A 3RETA 3REMA 5CKXC 2W1AC 3HGXA 2VKLA 3A2KA 3NVTA 3HGWA 2E89A 1ECMA 2W19C 2QBVA 2E21A 1WY5A 2H9DA 3RMIA 2H9CA 2D8EA 2D8DA 2GTVX 1YBZA 3TFCA
chains in the Genus database with same CATH topology

3RETA 3REMA 5CKXC 2W1AC 3HGXA 2VKLA 3NVTA 3HGWA 1ECMA 2W19C 2QBVA 2H9DA 3RMIA 2H9CA 2D8EA 2D8DA 2GTVX 1YBZA 3TFCA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3RET A;  3REM A;  5CKX C;  2W1A C;  3HGX A;  2VKL A;  3NVT A;  3HGW A;  1ECM A;  2W19 C;  2QBV A;  2H9D A;  3RMI A;  2H9C A;  2D8E A;  2D8D A;  2GTV X;  1YBZ A;  3TFC A; 
#chains in the Genus database with same CATH topology
 1NI5 A;  3RET A;  3REM A;  5CKX C;  2W1A C;  3HGX A;  2VKL A;  3A2K A;  3NVT A;  3HGW A;  2E89 A;  1ECM A;  2W19 C;  2QBV A;  2E21 A;  1WY5 A;  2H9D A;  3RMI A;  2H9C A;  2D8E A;  2D8D A;  2GTV X;  1YBZ A;  3TFC A; 
#chains in the Genus database with same CATH homology
 3RET A;  3REM A;  5CKX C;  2W1A C;  3HGX A;  2VKL A;  3NVT A;  3HGW A;  1ECM A;  2W19 C;  2QBV A;  2H9D A;  3RMI A;  2H9C A;  2D8E A;  2D8D A;  2GTV X;  1YBZ A;  3TFC A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2GTVX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations