2O3LA

Crystal structure of a duf1048 protein with a left-handed superhelix fold (bce_3448) from bacillus cereus atcc 10987 at 2.05 a resolution
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
83
structure length
83
Chain Sequence
GEYKMMMARVAALPEDYQFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVANAKTYV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of hypothetical protein (NP_979748.1) from Bacillus cereus ATCC 10987 at 2.05 A resolution
rcsb
molecule tags Unknown function
source organism Bacillus cereus
molecule keywords Hypothetical protein
total genus 22
structure length 83
sequence length 83
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-12-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1900.10 Mainly Alpha Orthogonal Bundle c-terminal domain of poly(a) binding protein c-terminal domain of poly(a) binding protein 2o3lA00
3KUTA 1JH4A 2X04A 2DYDA 3PTHA 3KUSA 2RQHB 3KUIA 2HH6A 3PKNA 4IVEA 1JGNA 3KUJA 3NTWA 3KTPA 1IFWA 2O3LA 3KURA 1I2TA 1G9LA 2RQGB 1NMRA 3KTRA 2O4TA
chains in the Genus database with same CATH superfamily
3KUTA 1JH4A 2X04A 2DYDA 3PTHA 3KUSA 2RQHB 3KUIA 2HH6A 3PKNA 4IVEA 4KXFB 1JGNA 2LKLA 3KUJA 3NTWA 3KTPA 3M92A 1GYZA 1IFWA 2O3LA 3KURA 1I2TA 1G9LA 2RQGB 2GHJA 1NMRA 3KTRA 2O4TA
chains in the Genus database with same CATH topology
3KUTA 1JH4A 2X04A 2DYDA 3PTHA 3KUSA 2RQHB 3KUIA 2HH6A 3PKNA 4IVEA 4KXFB 1JGNA 2LKLA 3KUJA 3NTWA 3KTPA 3M92A 1IFWA 2O3LA 3KURA 1I2TA 1G9LA 2RQGB 1NMRA 3KTRA 2O4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KUT A;  1JH4 A;  2X04 A;  2DYD A;  3PTH A;  3KUS A;  2RQH B;  3KUI A;  2HH6 A;  3PKN A;  4IVE A;  1JGN A;  3KUJ A;  3NTW A;  3KTP A;  1IFW A;  2O3L A;  3KUR A;  1I2T A;  1G9L A;  2RQG B;  1NMR A;  3KTR A;  2O4T A; 
#chains in the Genus database with same CATH topology
 3KUT A;  1JH4 A;  2X04 A;  2DYD A;  3PTH A;  3KUS A;  2RQH B;  3KUI A;  2HH6 A;  3PKN A;  4IVE A;  4KXF B;  1JGN A;  2LKL A;  3KUJ A;  3NTW A;  3KTP A;  3M92 A;  1GYZ A;  1IFW A;  2O3L A;  3KUR A;  1I2T A;  1G9L A;  2RQG B;  2GHJ A;  1NMR A;  3KTR A;  2O4T A; 
#chains in the Genus database with same CATH homology
 3KUT A;  1JH4 A;  2X04 A;  2DYD A;  3PTH A;  3KUS A;  2RQH B;  3KUI A;  2HH6 A;  3PKN A;  4IVE A;  4KXF B;  1JGN A;  2LKL A;  3KUJ A;  3NTW A;  3KTP A;  3M92 A;  1IFW A;  2O3L A;  3KUR A;  1I2T A;  1G9L A;  2RQG B;  1NMR A;  3KTR A;  2O4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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