2PK8 | Genus

Total Genus 29

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	94
structure length	94
Chain Sequence	STRGDLIRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEELGGDAVVIDSKVLGLVPGAAKRIKIIK

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__118590342100141__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__118590342100141__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2PK8/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__118590342100141__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"118590342100141","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2PK8/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__118590342100141__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution. pubmed doi rcsb
molecule keywords	Uncharacterized protein PF0899
molecule tags	Structural genomics, unknown function
source organism	Pyrococcus furiosus dsm 3638
total genus	29
structure length	94
sequence length	94
ec nomenclature
pdb deposition date	2007-04-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08967	DUF1884	Domain of unknown function (DUF1884)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	2pk8A00

3DKTA 3E8KA 2PK8A 1OHGA 2FSYA 2FT1A 2E0ZA
chains in the Genus database with same CATH superfamily

2DMAA 3E8KA 2FSYA 4DL0E 2FT1A 2DM9A 3K5BA 2LC0A 1YUEA 2PK8A 1OHGA 5AUPA 1WZ2A 4DT0A 3A44A 5AUOA 3V6IA 2E0ZA 2KDXA 3A43A 3DKTA 4EFAE 5AUNA 1QU3A
chains in the Genus database with same CATH topology

3DKTA 3E8KA 2PK8A 1OHGA 2FSYA 2FT1A 2E0ZA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3DKT A;  3E8K A;  2PK8 A;  1OHG A;  2FSY A;  2FT1 A;  2E0Z A; 
#chains in the Genus database with same CATH topology
 2DMA A;  3E8K A;  2FSY A;  4DL0 E;  2FT1 A;  2DM9 A;  3K5B A;  2LC0 A;  1YUE A;  2PK8 A;  1OHG A;  5AUP A;  1WZ2 A;  4DT0 A;  3A44 A;  5AUO A;  3V6I A;  2E0Z A;  2KDX A;  3A43 A;  3DKT A;  4EFA E;  5AUN A;  1QU3 A; 
#chains in the Genus database with same CATH homology
 3DKT A;  3E8K A;  2PK8 A;  1OHG A;  2FSY A;  2FT1 A;  2E0Z A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2PK8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations