2PRC | Genus

Total Genus 104

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	104
sequence length	273
structure length	273
Chain Sequence	ALLSFERKYRVRGGTLIGGDLFDFWVGPYFVGFFGVSAIFFIFLGVSLIGYAASQGPTWDPFAISINPPDLKYGLGAAPLLEGGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVFRPLLLGSWGHAFPYGILSHLDWVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGLHGGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALSIHRLGLFLASNIFLTGAFGTIASGPFWTRGWPEWWGWWLDIPFWS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The coupling of light-induced electron transfer and proton uptake as derived from crystal structures of reaction centres from Rhodopseudomonas viridis modified at the binding site of the secondary quinone, QB. pubmed doi rcsb
molecule keywords	PHOTOSYNTHETIC REACTION CENTER
molecule tags	Photosynthetic reaction center
total genus	104
structure length	273
sequence length	273
ec nomenclature
pdb deposition date	1997-07-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
L	PF00124	Photo_RC	Photosynthetic reaction centre protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M; domain 1	Photosystem II protein D1-like	2prcL01
1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M; domain 1	Photosystem II protein D1-like	2prcL02

2HH1M 3DTAL 1L9BL 1M3XM 2JBLL 3DUQM 3T6DL 1FNQM 2UWVM 1K6NM 3DSYL 3DU2L 1KBYL 2J8DM 1YSTL 1AIGM 1OGVL 2HH1L 4IN7L 2GMRM 2UWWL 3WMML 2WJNL 1PCRM 1F6NL 1M3XL 1FNQL 1K6NL 2J8DL 1AIGL 2UXMM 4LWYM 5PRCL 2HHKM 1JGYM 1R2CM 1PCRL 1E14L 1JGWM 3I4DM 1DV6M 2UXML 4LWYL 1JGYL 3DTRL 4CASC 1PSTM 2UX5L 1JGWL 3I4DL 1VRNL 1DV6L 2I5NL 1DXRM 3DTAM 1RGNM 1L9BM 2JIYM 2UWSM 2HG3M 4H9LM 3T6DM 3DU2M 4IN5M 4N7KM 5LRIL 1YSTM 2UWWM 1DXRL 1PRCM 2WJNM 1RGNL 1F6NM 2JIYL 2UWSL 2HG3L 4H9LL 3WMMM 4IN5L 4N7KL 5LSEM 2UXKM 5PRCM 3ZUMM 1DV3M 1PRCL 1E14M 2WJMM 2X5VL 4RCRL 1RZHL 2BNSA 2PRCM 3V3YL 5LSEL 2UXKL 3ZUML 4IN6L 1DV3L 3DTRM 4HBHL 1EYSM 2UX5M 2WJML 1VRNM 2PRCL 3T6EM 3ZUWM 3G7FM 1FNPM 1UMXM 1DS8M 1E6DM 2I5NM 1EYSL 1K6LL 1RZZM 3T6EL 7PRCL 1JGZM 3G7FL 3ZUWL 5LRIM 1FNPL 1UMXL 1DS8L 2UWTM 2WX5M 1E6DL 2HG9L 1RZZL 1JGZL 1RG5L 4TQQL 2UWTL 2UXJL 2WX5L 1YF6L 1JH0L 2X5VM 4H99M 4RCRM 1RZHM 3PRCL 6PRCM 2JJ0M 3V3YM 1RQKL 4IN6M 4HBHM 3D38M 4H99L 6PRCL 1L9JM 4CASB 3V3ZM 1QOVL 2UX4L 2JJ0L 1AIJL 1PSSL 3D38L 1K6LM 2BOZL 3DTSL 1L9JL 1JGXL 3V3ZL 7PRCM 3DU3L 2HJ6M 2BNSB 2HG9M 1RVJL 1RG5M 4TQQM 2UXJM 2HJ6L 1YF6M 4N7LM 1S00M 1JH0M 2J8CM 2RCRL 4HBJL 3PRCM 1RQKM 4N7LL 1S00L 1MPSM 2UWUM 3DUQL 2J8CL 2BNPA 2UWVL 1QOVM 2UX4M 2GNUM 1AIJM 2GMRL 1PSSM 2HITM 1MPSL 2UWUL 2BOZM 2X5UM 3DTSM 1RY5M 1JGXM 2GNUL 3DU3M 2HHKL 2BNPB 1R2CL 2HITL 4IN7M 2UXLM 2X5UL 1RY5L 2UX3M 1RVJM 1PSTL 2JBLM 2UXLL 2UX3L 3DSYM 2RCRM 4HBJM 1KBYM 1OGVM
chains in the Genus database with same CATH superfamily

2HH1M 3DTAL 1L9BL 1M3XM 2JBLL 3DUQM 3T6DL 1FNQM 2UWVM 1K6NM 3DSYL 3DU2L 1KBYL 2J8DM 1YSTL 1AIGM 1OGVL 2HH1L 4IN7L 2GMRM 2UWWL 3WMML 2WJNL 1PCRM 1F6NL 1M3XL 1FNQL 3WRXC 1K6NL 2J8DL 1AIGL 2UXMM 4LWYM 5PRCL 2HHKM 1JGYM 1R2CM 1PCRL 1E14L 1JGWM 3I4DM 1DV6M 2UXML 4LWYL 1JGYL 3DTRL 4CASC 1PSTM 2UX5L 1JGWL 3I4DL 1VRNL 1DV6L 2I5NL 1DXRM 3DTAM 3WRYC 1RGNM 1L9BM 2JIYM 2UWSM 2HG3M 4H9LM 3T6DM 3DU2M 4IN5M 4N7KM 5LRIL 1YSTM 2UWWM 1DXRL 1PRCM 2WJNM 1RGNL 1F6NM 2JIYL 2UWSL 2HG3L 4H9LL 3WMMM 4IN5L 4N7KL 5LSEM 2UXKM 5PRCM 3ZUMM 1DV3M 1PRCL 1E14M 2WJMM 2X5VL 4RCRL 1RZHL 2BNSA 2PRCM 3V3YL 5LSEL 2UXKL 3ZUML 4IN6L 1DV3L 3DTRM 4HBHL 1EYSM 2UX5M 2WJML 1VRNM 2PRCL 3T6EM 3ZUWM 3G7FM 1FNPM 1UMXM 1DS8M 1E6DM 2I5NM 1EYSL 1K6LL 1RZZM 3T6EL 7PRCL 1JGZM 3G7FL 3ZUWL 5LRIM 1FNPL 1UMXL 1DS8L 2UWTM 2WX5M 1E6DL 2HG9L 1RZZL 1JGZL 1RG5L 4TQQL 2UWTL 2UXJL 2WX5L 1YF6L 1JH0L 2X5VM 4H99M 4RCRM 1RZHM 3PRCL 6PRCM 2JJ0M 3V3YM 1RQKL 4IN6M 4HBHM 3D38M 4H99L 6PRCL 1L9JM 4CASB 3V3ZM 1QOVL 2UX4L 2JJ0L 1AIJL 1PSSL 3D38L 1K6LM 2BOZL 3DTSL 1L9JL 1JGXL 3V3ZL 7PRCM 3DU3L 2HJ6M 2BNSB 2HG9M 1RVJL 1RG5M 4TQQM 2UXJM 2HJ6L 1YF6M 4N7LM 1S00M 1JH0M 2J8CM 2RCRL 4HBJL 3PRCM 1RQKM 4N7LL 1S00L 1MPSM 2UWUM 3DUQL 2J8CL 2BNPA 2UWVL 1QOVM 2UX4M 2GNUM 1AIJM 2GMRL 1PSSM 2HITM 1MPSL 2UWUL 2BOZM 2X5UM 3DTSM 1RY5M 1JGXM 2GNUL 3DU3M 2HHKL 2BNPB 1R2CL 2HITL 4IN7M 2UXLM 2X5UL 1RY5L 2UX3M 3VKWA 1RVJM 1PSTL 2JBLM 2UXLL 2UX3L 3DSYM 2RCRM 4HBJM 1KBYM 1OGVM
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HH1 M;  3DTA L;  1L9B L;  1M3X M;  2JBL L;  3DUQ M;  3T6D L;  1FNQ M;  2UWV M;  1K6N M;  3DSY L;  3DU2 L;  1KBY L;  2J8D M;  1YST L;  1AIG M;  1OGV L;  2HH1 L;  4IN7 L;  2GMR M;  2UWW L;  3WMM L;  2WJN L;  1PCR M;  1F6N L;  1M3X L;  1FNQ L;  1K6N L;  2J8D L;  1AIG L;  2UXM M;  4LWY M;  5PRC L;  2HHK M;  1JGY M;  1R2C M;  1PCR L;  1E14 L;  1JGW M;  3I4D M;  1DV6 M;  2UXM L;  4LWY L;  1JGY L;  3DTR L;  4CAS C;  1PST M;  2UX5 L;  1JGW L;  3I4D L;  1VRN L;  1DV6 L;  2I5N L;  1DXR M;  3DTA M;  1RGN M;  1L9B M;  2JIY M;  2UWS M;  2HG3 M;  4H9L M;  3T6D M;  3DU2 M;  4IN5 M;  4N7K M;  5LRI L;  1YST M;  2UWW M;  1DXR L;  1PRC M;  2WJN M;  1RGN L;  1F6N M;  2JIY L;  2UWS L;  2HG3 L;  4H9L L;  3WMM M;  4IN5 L;  4N7K L;  5LSE M;  2UXK M;  5PRC M;  3ZUM M;  1DV3 M;  1PRC L;  1E14 M;  2WJM M;  2X5V L;  4RCR L;  1RZH L;  2BNS A;  2PRC M;  3V3Y L;  5LSE L;  2UXK L;  3ZUM L;  4IN6 L;  1DV3 L;  3DTR M;  4HBH L;  1EYS M;  2UX5 M;  2WJM L;  1VRN M;  2PRC L;  3T6E M;  3ZUW M;  3G7F M;  1FNP M;  1UMX M;  1DS8 M;  1E6D M;  2I5N M;  1EYS L;  1K6L L;  1RZZ M;  3T6E L;  7PRC L;  1JGZ M;  3G7F L;  3ZUW L;  5LRI M;  1FNP L;  1UMX L;  1DS8 L;  2UWT M;  2WX5 M;  1E6D L;  2HG9 L;  1RZZ L;  1JGZ L;  1RG5 L;  4TQQ L;  2UWT L;  2UXJ L;  2WX5 L;  1YF6 L;  1JH0 L;  2X5V M;  4H99 M;  4RCR M;  1RZH M;  3PRC L;  6PRC M;  2JJ0 M;  3V3Y M;  1RQK L;  4IN6 M;  4HBH M;  3D38 M;  4H99 L;  6PRC L;  1L9J M;  4CAS B;  3V3Z M;  1QOV L;  2UX4 L;  2JJ0 L;  1AIJ L;  1PSS L;  3D38 L;  1K6L M;  2BOZ L;  3DTS L;  1L9J L;  1JGX L;  3V3Z L;  7PRC M;  3DU3 L;  2HJ6 M;  2BNS B;  2HG9 M;  1RVJ L;  1RG5 M;  4TQQ M;  2UXJ M;  2HJ6 L;  1YF6 M;  4N7L M;  1S00 M;  1JH0 M;  2J8C M;  2RCR L;  4HBJ L;  3PRC M;  1RQK M;  4N7L L;  1S00 L;  1MPS M;  2UWU M;  3DUQ L;  2J8C L;  2BNP A;  2UWV L;  1QOV M;  2UX4 M;  2GNU M;  1AIJ M;  2GMR L;  1PSS M;  2HIT M;  1MPS L;  2UWU L;  2BOZ M;  2X5U M;  3DTS M;  1RY5 M;  1JGX M;  2GNU L;  3DU3 M;  2HHK L;  2BNP B;  1R2C L;  2HIT L;  4IN7 M;  2UXL M;  2X5U L;  1RY5 L;  2UX3 M;  1RVJ M;  1PST L;  2JBL M;  2UXL L;  2UX3 L;  3DSY M;  2RCR M;  4HBJ M;  1KBY M;  1OGV M; 
#chains in the Genus database with same CATH topology
 2HH1 M;  3DTA L;  1L9B L;  1M3X M;  2JBL L;  3DUQ M;  3T6D L;  1FNQ M;  2UWV M;  1K6N M;  3DSY L;  3DU2 L;  1KBY L;  2J8D M;  1YST L;  1AIG M;  1OGV L;  2HH1 L;  4IN7 L;  2GMR M;  2UWW L;  3WMM L;  2WJN L;  1PCR M;  1F6N L;  1M3X L;  1FNQ L;  3WRX C;  1K6N L;  2J8D L;  1AIG L;  2UXM M;  4LWY M;  5PRC L;  2HHK M;  1JGY M;  1R2C M;  1PCR L;  1E14 L;  1JGW M;  3I4D M;  1DV6 M;  2UXM L;  4LWY L;  1JGY L;  3DTR L;  4CAS C;  1PST M;  2UX5 L;  1JGW L;  3I4D L;  1VRN L;  1DV6 L;  2I5N L;  1DXR M;  3DTA M;  3WRY C;  1RGN M;  1L9B M;  2JIY M;  2UWS M;  2HG3 M;  4H9L M;  3T6D M;  3DU2 M;  4IN5 M;  4N7K M;  5LRI L;  1YST M;  2UWW M;  1DXR L;  1PRC M;  2WJN M;  1RGN L;  1F6N M;  2JIY L;  2UWS L;  2HG3 L;  4H9L L;  3WMM M;  4IN5 L;  4N7K L;  5LSE M;  2UXK M;  5PRC M;  3ZUM M;  1DV3 M;  1PRC L;  1E14 M;  2WJM M;  2X5V L;  4RCR L;  1RZH L;  2BNS A;  2PRC M;  3V3Y L;  5LSE L;  2UXK L;  3ZUM L;  4IN6 L;  1DV3 L;  3DTR M;  4HBH L;  1EYS M;  2UX5 M;  2WJM L;  1VRN M;  2PRC L;  3T6E M;  3ZUW M;  3G7F M;  1FNP M;  1UMX M;  1DS8 M;  1E6D M;  2I5N M;  1EYS L;  1K6L L;  1RZZ M;  3T6E L;  7PRC L;  1JGZ M;  3G7F L;  3ZUW L;  5LRI M;  1FNP L;  1UMX L;  1DS8 L;  2UWT M;  2WX5 M;  1E6D L;  2HG9 L;  1RZZ L;  1JGZ L;  1RG5 L;  4TQQ L;  2UWT L;  2UXJ L;  2WX5 L;  1YF6 L;  1JH0 L;  2X5V M;  4H99 M;  4RCR M;  1RZH M;  3PRC L;  6PRC M;  2JJ0 M;  3V3Y M;  1RQK L;  4IN6 M;  4HBH M;  3D38 M;  4H99 L;  6PRC L;  1L9J M;  4CAS B;  3V3Z M;  1QOV L;  2UX4 L;  2JJ0 L;  1AIJ L;  1PSS L;  3D38 L;  1K6L M;  2BOZ L;  3DTS L;  1L9J L;  1JGX L;  3V3Z L;  7PRC M;  3DU3 L;  2HJ6 M;  2BNS B;  2HG9 M;  1RVJ L;  1RG5 M;  4TQQ M;  2UXJ M;  2HJ6 L;  1YF6 M;  4N7L M;  1S00 M;  1JH0 M;  2J8C M;  2RCR L;  4HBJ L;  3PRC M;  1RQK M;  4N7L L;  1S00 L;  1MPS M;  2UWU M;  3DUQ L;  2J8C L;  2BNP A;  2UWV L;  1QOV M;  2UX4 M;  2GNU M;  1AIJ M;  2GMR L;  1PSS M;  2HIT M;  1MPS L;  2UWU L;  2BOZ M;  2X5U M;  3DTS M;  1RY5 M;  1JGX M;  2GNU L;  3DU3 M;  2HHK L;  2BNP B;  1R2C L;  2HIT L;  4IN7 M;  2UXL M;  2X5U L;  1RY5 L;  2UX3 M;  3VKW A;  1RVJ M;  1PST L;  2JBL M;  2UXL L;  2UX3 L;  3DSY M;  2RCR M;  4HBJ M;  1KBY M;  1OGV M; 
#chains in the Genus database with same CATH homology
 2HH1 M;  3DTA L;  1L9B L;  1M3X M;  2JBL L;  3DUQ M;  3T6D L;  1FNQ M;  2UWV M;  1K6N M;  3DSY L;  3DU2 L;  1KBY L;  2J8D M;  1YST L;  1AIG M;  1OGV L;  2HH1 L;  4IN7 L;  2GMR M;  2UWW L;  3WMM L;  2WJN L;  1PCR M;  1F6N L;  1M3X L;  1FNQ L;  1K6N L;  2J8D L;  1AIG L;  2UXM M;  4LWY M;  5PRC L;  2HHK M;  1JGY M;  1R2C M;  1PCR L;  1E14 L;  1JGW M;  3I4D M;  1DV6 M;  2UXM L;  4LWY L;  1JGY L;  3DTR L;  4CAS C;  1PST M;  2UX5 L;  1JGW L;  3I4D L;  1VRN L;  1DV6 L;  2I5N L;  1DXR M;  3DTA M;  1RGN M;  1L9B M;  2JIY M;  2UWS M;  2HG3 M;  4H9L M;  3T6D M;  3DU2 M;  4IN5 M;  4N7K M;  5LRI L;  1YST M;  2UWW M;  1DXR L;  1PRC M;  2WJN M;  1RGN L;  1F6N M;  2JIY L;  2UWS L;  2HG3 L;  4H9L L;  3WMM M;  4IN5 L;  4N7K L;  5LSE M;  2UXK M;  5PRC M;  3ZUM M;  1DV3 M;  1PRC L;  1E14 M;  2WJM M;  2X5V L;  4RCR L;  1RZH L;  2BNS A;  2PRC M;  3V3Y L;  5LSE L;  2UXK L;  3ZUM L;  4IN6 L;  1DV3 L;  3DTR M;  4HBH L;  1EYS M;  2UX5 M;  2WJM L;  1VRN M;  2PRC L;  3T6E M;  3ZUW M;  3G7F M;  1FNP M;  1UMX M;  1DS8 M;  1E6D M;  2I5N M;  1EYS L;  1K6L L;  1RZZ M;  3T6E L;  7PRC L;  1JGZ M;  3G7F L;  3ZUW L;  5LRI M;  1FNP L;  1UMX L;  1DS8 L;  2UWT M;  2WX5 M;  1E6D L;  2HG9 L;  1RZZ L;  1JGZ L;  1RG5 L;  4TQQ L;  2UWT L;  2UXJ L;  2WX5 L;  1YF6 L;  1JH0 L;  2X5V M;  4H99 M;  4RCR M;  1RZH M;  3PRC L;  6PRC M;  2JJ0 M;  3V3Y M;  1RQK L;  4IN6 M;  4HBH M;  3D38 M;  4H99 L;  6PRC L;  1L9J M;  4CAS B;  3V3Z M;  1QOV L;  2UX4 L;  2JJ0 L;  1AIJ L;  1PSS L;  3D38 L;  1K6L M;  2BOZ L;  3DTS L;  1L9J L;  1JGX L;  3V3Z L;  7PRC M;  3DU3 L;  2HJ6 M;  2BNS B;  2HG9 M;  1RVJ L;  1RG5 M;  4TQQ M;  2UXJ M;  2HJ6 L;  1YF6 M;  4N7L M;  1S00 M;  1JH0 M;  2J8C M;  2RCR L;  4HBJ L;  3PRC M;  1RQK M;  4N7L L;  1S00 L;  1MPS M;  2UWU M;  3DUQ L;  2J8C L;  2BNP A;  2UWV L;  1QOV M;  2UX4 M;  2GNU M;  1AIJ M;  2GMR L;  1PSS M;  2HIT M;  1MPS L;  2UWU L;  2BOZ M;  2X5U M;  3DTS M;  1RY5 M;  1JGX M;  2GNU L;  3DU3 M;  2HHK L;  2BNP B;  1R2C L;  2HIT L;  4IN7 M;  2UXL M;  2X5U L;  1RY5 L;  2UX3 M;  1RVJ M;  1PST L;  2JBL M;  2UXL L;  2UX3 L;  3DSY M;  2RCR M;  4HBJ M;  1KBY M;  1OGV M;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2PRCL

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations