3AYF | Genus

Total Genus 312

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	312
sequence length	761
structure length	754
Chain Sequence	TTNSFLKSILIFTILISSTVLLVGGYWIFKEMAPRPKEVRSESGEVLMTKETIIGGQAVFQKYGLMDYGTVLGHGSYMGPDYTAEALKVYTEGMQDYKAKADLTDDEKSIIREQVIKEMRKNRYNPVTDVLVLTDAQVYGLEKVRDYYRDVFTNGDGWGLKKGLIKESDMPKANRAWVADSDQIQQIADFFFWTAWLSSTLRIGDEITYTNNWPYYEDAGNTMSFSAVWWSGASVTILILFIGIILYVFYRYQLSMQEAYAEGKFPVIDLRRQPLTPSQVKAGKYFVVVSALFFVQTMFGALLAHYYTEPDSFFGINWIYDILPFNIAKGYHLQLAIFWIATAWLGMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGQWLGVNGYLGNEWFLLGHQGWEYIELGRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSAIAVPFFYIFAFFIQPDTNFTMADFWRWWIIHLWVEGIFEVFAVVVIGFLLVQLRLVTKKSTVRALYFQFTILLGSGVIGIGHHYYYNGSPEVWIALGAVFSALEVIPLTLLILEAYEQYKMMRDGGANFPYKATFWFLISTAIWNLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMMGVYGMFAIAVLLYSLRNIVKPEAWNDKWLKFSCWMLNIGLAGMVVITLLPVGILQMKEAFIHGYWASRSPSFLQQDVVQNLLLVRAVPDTIFLIGVVALLVFAIKALFHLRKPTHGEGEE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Geobacillus stearothermophilus
publication title	Crystal structure of quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus pubmed doi rcsb
molecule keywords	Nitric oxide reductase
total genus	312
structure length	754
sequence length	761
ec nomenclature
pdb deposition date	2011-05-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00115	COX1	Cytochrome C and Quinol oxidase polypeptide I

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.210.10	Mainly Alpha	Up-down Bundle	Cytochrome C Oxidase; Chain A	Cytochrome c oxidase-like, subunit I domain	3ayfA01

3S8GA 3WFBB 3AG2A 3QJTA 4N4YA 3WFEB 3QJVA 3MK7A 1XMEA 3ABLA 3AG4A 1QLEA 3AYFA 2EIKA 3EH3A 4G71A 5DJQA 1V54A 3DTUA 3QJQA 3BVDA 3S3BA 2ZXWA 2EIMA 4G7RA 2GSMA 4G70A 3WG7A 4GP5A 3EH5A 1FFTA 3S8FA 1OCZA 3EHBA 3S3DA 2DYRA 3OMNA 1M57A 5B3SA 4FAAA 3AG3A 3ABKA 2EINA 3QJRA 3AYGA 3EH4A 3QJSA 2QPEA 4GP8A 3O0RB 2YEVA 4G72A 2OCCA 2DYSA 5IY5A 2QPDA 3HB3A 3ABMA 1EHKA 4G7SA 3OM3A 3WFCB 3AG1A 3FYEA 2EIJA 4GP4A 3S3CA 1OCRA 3X2QA 4G7QA 3OMAA 3QJUA 3ASNA 3OMIA 3FYIA 3ASOA 4FA7A 1OCCA 2Y69A 1OCOA 1AR1A 2EILA 1V55A 4XYDA 5B1AA 5B1BA 3WFDB 1M56A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3S8G A;  3WFB B;  3AG2 A;  3QJT A;  4N4Y A;  3WFE B;  3QJV A;  3MK7 A;  1XME A;  3ABL A;  3AG4 A;  1QLE A;  3AYF A;  2EIK A;  3EH3 A;  4G71 A;  5DJQ A;  1V54 A;  3DTU A;  3QJQ A;  3BVD A;  3S3B A;  2ZXW A;  2EIM A;  4G7R A;  2GSM A;  4G70 A;  3WG7 A;  4GP5 A;  3EH5 A;  1FFT A;  3S8F A;  1OCZ A;  3EHB A;  3S3D A;  2DYR A;  3OMN A;  1M57 A;  5B3S A;  4FAA A;  3AG3 A;  3ABK A;  2EIN A;  3QJR A;  3AYG A;  3EH4 A;  3QJS A;  2QPE A;  4GP8 A;  3O0R B;  2YEV A;  4G72 A;  2OCC A;  2DYS A;  5IY5 A;  2QPD A;  3HB3 A;  3ABM A;  1EHK A;  4G7S A;  3OM3 A;  3WFC B;  3AG1 A;  3FYE A;  2EIJ A;  4GP4 A;  3S3C A;  1OCR A;  3X2Q A;  4G7Q A;  3OMA A;  3QJU A;  3ASN A;  3OMI A;  3FYI A;  3ASO A;  4FA7 A;  1OCC A;  2Y69 A;  1OCO A;  1AR1 A;  2EIL A;  1V55 A;  4XYD A;  5B1A A;  5B1B A;  3WFD B;  1M56 A; 
#chains in the Genus database with same CATH topology
 3S8G A;  3WFB B;  3AG2 A;  3QJT A;  4N4Y A;  3WFE B;  3QJV A;  3MK7 A;  1XME A;  3ABL A;  3AG4 A;  1QLE A;  3AYF A;  2EIK A;  3EH3 A;  4G71 A;  5DJQ A;  1V54 A;  3DTU A;  3QJQ A;  3BVD A;  3S3B A;  2ZXW A;  2EIM A;  4G7R A;  2GSM A;  4G70 A;  3WG7 A;  4GP5 A;  3EH5 A;  1FFT A;  3S8F A;  1OCZ A;  3EHB A;  3S3D A;  2DYR A;  3OMN A;  1M57 A;  5B3S A;  4FAA A;  3AG3 A;  3ABK A;  2EIN A;  3QJR A;  3AYG A;  3EH4 A;  3QJS A;  2QPE A;  4GP8 A;  3O0R B;  2YEV A;  4G72 A;  2OCC A;  2DYS A;  5IY5 A;  2QPD A;  3HB3 A;  3ABM A;  1EHK A;  4G7S A;  3OM3 A;  3WFC B;  3AG1 A;  3FYE A;  2EIJ A;  4GP4 A;  3S3C A;  1OCR A;  3X2Q A;  4G7Q A;  3OMA A;  3QJU A;  3ASN A;  3OMI A;  3FYI A;  3ASO A;  4FA7 A;  1OCC A;  2Y69 A;  1OCO A;  1AR1 A;  2EIL A;  1V55 A;  4XYD A;  5B1A A;  5B1B A;  3WFD B;  1M56 A; 
#chains in the Genus database with same CATH homology
 3S8G A;  3WFB B;  3AG2 A;  3QJT A;  4N4Y A;  3WFE B;  3QJV A;  3MK7 A;  1XME A;  3ABL A;  3AG4 A;  1QLE A;  3AYF A;  2EIK A;  3EH3 A;  4G71 A;  5DJQ A;  1V54 A;  3DTU A;  3QJQ A;  3BVD A;  3S3B A;  2ZXW A;  2EIM A;  4G7R A;  2GSM A;  4G70 A;  3WG7 A;  4GP5 A;  3EH5 A;  1FFT A;  3S8F A;  1OCZ A;  3EHB A;  3S3D A;  2DYR A;  3OMN A;  1M57 A;  5B3S A;  4FAA A;  3AG3 A;  3ABK A;  2EIN A;  3QJR A;  3AYG A;  3EH4 A;  3QJS A;  2QPE A;  4GP8 A;  3O0R B;  2YEV A;  4G72 A;  2OCC A;  2DYS A;  5IY5 A;  2QPD A;  3HB3 A;  3ABM A;  1EHK A;  4G7S A;  3OM3 A;  3WFC B;  3AG1 A;  3FYE A;  2EIJ A;  4GP4 A;  3S3C A;  1OCR A;  3X2Q A;  4G7Q A;  3OMA A;  3QJU A;  3ASN A;  3OMI A;  3FYI A;  3ASO A;  4FA7 A;  1OCC A;  2Y69 A;  1OCO A;  1AR1 A;  2EIL A;  1V55 A;  4XYD A;  5B1A A;  5B1B A;  3WFD B;  1M56 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3AYFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations