3EHBA

A d-pathway mutation decouples the paracoccus denitrificans cytochrome c oxidase by altering the side chain orientation of a distant, conserved glutamate
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
529
structure length
529
Chain Sequence
GFFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRMELQHPGVQYMCLEGARLIADASAECTPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLDNLSYWMYVCGVALGVASLLAPGGNDQMGSGVGWVLYPPLSTTEAGYSMDLAIFAVHVSGASSILGAINIITTFLNMRAPGMTLFKVPLFAWSVFITAWLILLSLPVLAGAITMLLMDRNFGTQFFDPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVISTFAKKPIFGYLPMVLAMAAIGILGFVVWAHHMYTAGMSLTQQAYFMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLWAFGFLFLFTVGGVTGVVLSQAPLDRVYHDTYYVVAHFHYVMSLGAVFGIFAGVYYWIGKMSGRQYPEWAGQLHFWMMFIGSNLIFFPQHFLGRQGMPRRYIDYPVEFAYWNNISSIGAYISFASFLFFIGIVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPPPEHTFET

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A d-pathway mutation decouples the paracoccusdenitrificans cytochrome C oxidase by altering the side-chain orientation of a distant conserved glutamate
pubmed doi rcsb
molecule tags Oxidoreductase/immune system
source organism Paracoccus denitrificans
molecule keywords Cytochrome c oxidase subunit 1-beta
total genus 221
structure length 529
sequence length 529
ec nomenclature ec 1.9.3.1: Cytochrome-c oxidase.
pdb deposition date 2008-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome c oxidase-like, subunit I domain 3ehbA00
5B3SA 1FFTA 5B1BA 4G7RA 5IY5A 1OCRA 3WG7A 4G70A 4GP5A 3DTUA 2Y69A 3WFCB 1M57A 3EH4A 4GP4A 1OCZA 3OMAA 1AR1A 5B1AA 2OCCA 3EHBA 1XMEA 3S3CA 3ASOA 3ABMA 5DJQA 3WFEB 3ASNA 4G7QA 3QJQA 4N4YA 2DYRA 3FYIA 3MK7A 3HB3A 2EIJA 3QJRA 1OCCA 3WFDB 4GP8A 3OMIA 3OM3A 3AG2A 1OCOA 3S3BA 2ZXWA 4XYDA 2EINA 3QJSA 1M56A 3ABKA 3AG3A 3O0RB 3QJTA 4G7SA 4G72A 3S8GA 3BVDA 1V54A 2DYSA 2QPDA 3WFBB 1QLEA 3S8FA 3ABLA 2QPEA 3AYFA 2EIMA 3QJUA 3EH5A 4FAAA 2YEVA 4G71A 3S3DA 2EILA 3FYEA 3EH3A 3AYGA 3AG4A 1EHKA 3X2QA 3QJVA 1V55A 2EIKA 4FA7A 3AG1A 3OMNA 2GSMA
chains in the Genus database with same CATH superfamily
5B3SA 1FFTA 5B1BA 4G7RA 5IY5A 1OCRA 3WG7A 4G70A 4GP5A 3DTUA 2Y69A 3WFCB 1M57A 3EH4A 4GP4A 1OCZA 3OMAA 1AR1A 5B1AA 2OCCA 3EHBA 1XMEA 3S3CA 3ASOA 3ABMA 5DJQA 3WFEB 3ASNA 4G7QA 3QJQA 4N4YA 2DYRA 3FYIA 3MK7A 3HB3A 2EIJA 3QJRA 1OCCA 3WFDB 4GP8A 3OMIA 3OM3A 3AG2A 1OCOA 3S3BA 2ZXWA 4XYDA 2EINA 3QJSA 1M56A 3ABKA 3AG3A 3O0RB 3QJTA 4G7SA 4G72A 3S8GA 3BVDA 1V54A 2DYSA 2QPDA 3WFBB 1QLEA 3S8FA 3ABLA 2QPEA 3AYFA 2EIMA 3QJUA 3EH5A 4FAAA 2YEVA 4G71A 3S3DA 2EILA 3FYEA 3EH3A 3AYGA 3AG4A 1EHKA 3X2QA 3QJVA 1V55A 2EIKA 4FA7A 3AG1A 3OMNA 2GSMA
chains in the Genus database with same CATH topology
5B3SA 1FFTA 5B1BA 4G7RA 5IY5A 1OCRA 3WG7A 4G70A 4GP5A 3DTUA 2Y69A 3WFCB 1M57A 3EH4A 4GP4A 1OCZA 3OMAA 1AR1A 5B1AA 2OCCA 3EHBA 1XMEA 3S3CA 3ASOA 3ABMA 5DJQA 3WFEB 3ASNA 4G7QA 3QJQA 4N4YA 2DYRA 3FYIA 3MK7A 3HB3A 2EIJA 3QJRA 1OCCA 3WFDB 4GP8A 3OMIA 3OM3A 3AG2A 1OCOA 3S3BA 2ZXWA 4XYDA 2EINA 3QJSA 1M56A 3ABKA 3AG3A 3O0RB 3QJTA 4G7SA 4G72A 3S8GA 3BVDA 1V54A 2DYSA 2QPDA 3WFBB 1QLEA 3S8FA 3ABLA 2QPEA 3AYFA 2EIMA 3QJUA 3EH5A 4FAAA 2YEVA 4G71A 3S3DA 2EILA 3FYEA 3EH3A 3AYGA 3AG4A 1EHKA 3X2QA 3QJVA 1V55A 2EIKA 4FA7A 3AG1A 3OMNA 2GSMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5B3S A;  1FFT A;  5B1B A;  4G7R A;  5IY5 A;  1OCR A;  3WG7 A;  4G70 A;  4GP5 A;  3DTU A;  2Y69 A;  3WFC B;  1M57 A;  3EH4 A;  4GP4 A;  1OCZ A;  3OMA A;  1AR1 A;  5B1A A;  2OCC A;  3EHB A;  1XME A;  3S3C A;  3ASO A;  3ABM A;  5DJQ A;  3WFE B;  3ASN A;  4G7Q A;  3QJQ A;  4N4Y A;  2DYR A;  3FYI A;  3MK7 A;  3HB3 A;  2EIJ A;  3QJR A;  1OCC A;  3WFD B;  4GP8 A;  3OMI A;  3OM3 A;  3AG2 A;  1OCO A;  3S3B A;  2ZXW A;  4XYD A;  2EIN A;  3QJS A;  1M56 A;  3ABK A;  3AG3 A;  3O0R B;  3QJT A;  4G7S A;  4G72 A;  3S8G A;  3BVD A;  1V54 A;  2DYS A;  2QPD A;  3WFB B;  1QLE A;  3S8F A;  3ABL A;  2QPE A;  3AYF A;  2EIM A;  3QJU A;  3EH5 A;  4FAA A;  2YEV A;  4G71 A;  3S3D A;  2EIL A;  3FYE A;  3EH3 A;  3AYG A;  3AG4 A;  1EHK A;  3X2Q A;  3QJV A;  1V55 A;  2EIK A;  4FA7 A;  3AG1 A;  3OMN A;  2GSM A; 
#chains in the Genus database with same CATH topology
 5B3S A;  1FFT A;  5B1B A;  4G7R A;  5IY5 A;  1OCR A;  3WG7 A;  4G70 A;  4GP5 A;  3DTU A;  2Y69 A;  3WFC B;  1M57 A;  3EH4 A;  4GP4 A;  1OCZ A;  3OMA A;  1AR1 A;  5B1A A;  2OCC A;  3EHB A;  1XME A;  3S3C A;  3ASO A;  3ABM A;  5DJQ A;  3WFE B;  3ASN A;  4G7Q A;  3QJQ A;  4N4Y A;  2DYR A;  3FYI A;  3MK7 A;  3HB3 A;  2EIJ A;  3QJR A;  1OCC A;  3WFD B;  4GP8 A;  3OMI A;  3OM3 A;  3AG2 A;  1OCO A;  3S3B A;  2ZXW A;  4XYD A;  2EIN A;  3QJS A;  1M56 A;  3ABK A;  3AG3 A;  3O0R B;  3QJT A;  4G7S A;  4G72 A;  3S8G A;  3BVD A;  1V54 A;  2DYS A;  2QPD A;  3WFB B;  1QLE A;  3S8F A;  3ABL A;  2QPE A;  3AYF A;  2EIM A;  3QJU A;  3EH5 A;  4FAA A;  2YEV A;  4G71 A;  3S3D A;  2EIL A;  3FYE A;  3EH3 A;  3AYG A;  3AG4 A;  1EHK A;  3X2Q A;  3QJV A;  1V55 A;  2EIK A;  4FA7 A;  3AG1 A;  3OMN A;  2GSM A; 
#chains in the Genus database with same CATH homology
 5B3S A;  1FFT A;  5B1B A;  4G7R A;  5IY5 A;  1OCR A;  3WG7 A;  4G70 A;  4GP5 A;  3DTU A;  2Y69 A;  3WFC B;  1M57 A;  3EH4 A;  4GP4 A;  1OCZ A;  3OMA A;  1AR1 A;  5B1A A;  2OCC A;  3EHB A;  1XME A;  3S3C A;  3ASO A;  3ABM A;  5DJQ A;  3WFE B;  3ASN A;  4G7Q A;  3QJQ A;  4N4Y A;  2DYR A;  3FYI A;  3MK7 A;  3HB3 A;  2EIJ A;  3QJR A;  1OCC A;  3WFD B;  4GP8 A;  3OMI A;  3OM3 A;  3AG2 A;  1OCO A;  3S3B A;  2ZXW A;  4XYD A;  2EIN A;  3QJS A;  1M56 A;  3ABK A;  3AG3 A;  3O0R B;  3QJT A;  4G7S A;  4G72 A;  3S8G A;  3BVD A;  1V54 A;  2DYS A;  2QPD A;  3WFB B;  1QLE A;  3S8F A;  3ABL A;  2QPE A;  3AYF A;  2EIM A;  3QJU A;  3EH5 A;  4FAA A;  2YEV A;  4G71 A;  3S3D A;  2EIL A;  3FYE A;  3EH3 A;  3AYG A;  3AG4 A;  1EHK A;  3X2Q A;  3QJV A;  1V55 A;  2EIK A;  4FA7 A;  3AG1 A;  3OMN A;  2GSM A; 
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