3H1JI

Stigmatellin-bound cytochrome bc1 complex from chicken
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
XXXXXXXXXXXXXXXRPLLCRESMSGRSARRDLVAGISLNAPASVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Electron Transfer by Domain Movement in Cytochrome Bc1
pubmed rcsb
molecule keywords MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE
molecule tags Oxidoreductase
total genus 1
structure length 46
sequence length 46
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2009-04-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 3h1jI00
1SQQI 3L75I 1NU1I 3L71I 1NTZI 1NTMI 3H1KI 4U3FI 1PPJI 1L0NI 3TGUI 3L74I 3H1JI 3H1HI 3L72I 2FYUI 3H1LI 3L70I 1L0LI 3CWBI 1NTKI 1SQBI 1SQVI 1PP9I 3L73I 3H1II 2A06I 1SQXI 1SQPI
chains in the Genus database with same CATH superfamily
1SQQI 3L75I 1NU1I 3L71I 1NTZI 1NTMI 3H1KI 4U3FI 1PPJI 1L0NI 3TGUI 3L74I 3H1JI 3H1HI 3L72I 2FYUI 3H1LI 3L70I 1L0LI 3CWBI 1NTKI 1SQBI 1SQVI 1PP9I 3L73I 3H1II 2A06I 1SQXI 1SQPI
chains in the Genus database with same CATH topology
1SQQI 3L75I 1NU1I 3L71I 1NTZI 1NTMI 3H1KI 4U3FI 1PPJI 1L0NI 3TGUI 3L74I 3H1JI 3H1HI 3L72I 2FYUI 3H1LI 3L70I 1L0LI 3CWBI 1NTKI 1SQBI 1SQVI 1PP9I 3L73I 3H1II 2A06I 1SQXI 1SQPI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1SQQ I;  3L75 I;  1NU1 I;  3L71 I;  1NTZ I;  1NTM I;  3H1K I;  4U3F I;  1PPJ I;  1L0N I;  3TGU I;  3L74 I;  3H1J I;  3H1H I;  3L72 I;  2FYU I;  3H1L I;  3L70 I;  1L0L I;  3CWB I;  1NTK I;  1SQB I;  1SQV I;  1PP9 I;  3L73 I;  3H1I I;  2A06 I;  1SQX I;  1SQP I; 
#chains in the Genus database with same CATH topology
 1SQQ I;  3L75 I;  1NU1 I;  3L71 I;  1NTZ I;  1NTM I;  3H1K I;  4U3F I;  1PPJ I;  1L0N I;  3TGU I;  3L74 I;  3H1J I;  3H1H I;  3L72 I;  2FYU I;  3H1L I;  3L70 I;  1L0L I;  3CWB I;  1NTK I;  1SQB I;  1SQV I;  1PP9 I;  3L73 I;  3H1I I;  2A06 I;  1SQX I;  1SQP I; 
#chains in the Genus database with same CATH homology
 1SQQ I;  3L75 I;  1NU1 I;  3L71 I;  1NTZ I;  1NTM I;  3H1K I;  4U3F I;  1PPJ I;  1L0N I;  3TGU I;  3L74 I;  3H1J I;  3H1H I;  3L72 I;  2FYU I;  3H1L I;  3L70 I;  1L0L I;  3CWB I;  1NTK I;  1SQB I;  1SQV I;  1PP9 I;  3L73 I;  3H1I I;  2A06 I;  1SQX I;  1SQP I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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