3H1LI

Chicken cytochrome bc1 complex with ascochlorin bound at qo and qi sites
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
XXXXXXXXXXXXXXXRPLLCRESMSGRSARRDLVAGISLNAPASVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Ascochlorin is a novel, specific inhibitor of the mitochondrial cytochrome bc(1) complex.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE
total genus 1
structure length 46
sequence length 46
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2009-04-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 3h1lI00
1SQPI 1PP9I 3H1HI 3L72I 4U3FI 3L73I 2FYUI 1SQXI 3CWBI 3H1JI 1PPJI 3L70I 3H1KI 1SQQI 3L75I 1NTZI 3TGUI 1L0NI 3H1LI 1SQVI 1NU1I 1NTKI 3H1II 3L74I 1L0LI 1SQBI 1NTMI 3L71I 2A06I
chains in the Genus database with same CATH superfamily
1SQPI 1PP9I 3H1HI 3L72I 4U3FI 3L73I 2FYUI 1SQXI 3CWBI 3H1JI 1PPJI 3L70I 3H1KI 1SQQI 3L75I 1NTZI 3TGUI 1L0NI 3H1LI 1SQVI 1NU1I 1NTKI 3H1II 3L74I 1L0LI 1SQBI 1NTMI 3L71I 2A06I
chains in the Genus database with same CATH topology
1SQPI 1PP9I 3H1HI 3L72I 4U3FI 3L73I 2FYUI 1SQXI 3CWBI 3H1JI 1PPJI 3L70I 3H1KI 1SQQI 3L75I 1NTZI 3TGUI 1L0NI 3H1LI 1SQVI 1NU1I 1NTKI 3H1II 3L74I 1L0LI 1SQBI 1NTMI 3L71I 2A06I
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1SQP I;  1PP9 I;  3H1H I;  3L72 I;  4U3F I;  3L73 I;  2FYU I;  1SQX I;  3CWB I;  3H1J I;  1PPJ I;  3L70 I;  3H1K I;  1SQQ I;  3L75 I;  1NTZ I;  3TGU I;  1L0N I;  3H1L I;  1SQV I;  1NU1 I;  1NTK I;  3H1I I;  3L74 I;  1L0L I;  1SQB I;  1NTM I;  3L71 I;  2A06 I; 
#chains in the Genus database with same CATH topology
 1SQP I;  1PP9 I;  3H1H I;  3L72 I;  4U3F I;  3L73 I;  2FYU I;  1SQX I;  3CWB I;  3H1J I;  1PPJ I;  3L70 I;  3H1K I;  1SQQ I;  3L75 I;  1NTZ I;  3TGU I;  1L0N I;  3H1L I;  1SQV I;  1NU1 I;  1NTK I;  3H1I I;  3L74 I;  1L0L I;  1SQB I;  1NTM I;  3L71 I;  2A06 I; 
#chains in the Genus database with same CATH homology
 1SQP I;  1PP9 I;  3H1H I;  3L72 I;  4U3F I;  3L73 I;  2FYU I;  1SQX I;  3CWB I;  3H1J I;  1PPJ I;  3L70 I;  3H1K I;  1SQQ I;  3L75 I;  1NTZ I;  3TGU I;  1L0N I;  3H1L I;  1SQV I;  1NU1 I;  1NTK I;  3H1I I;  3L74 I;  1L0L I;  1SQB I;  1NTM I;  3L71 I;  2A06 I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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