3KI5A

Catalytic fragment of cholix toxin from vibrio cholerae in complex with inhibitor gp-m
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
206
structure length
199
Chain Sequence
GSHMAVITPQGVTNWTYQELEATHQALTREGYVFVGYHGTNHVAAQTIVNRIAPVNEEKWGGLYVATHAEVAHGYARIKEGTGEYGLPTRAERDARGVMLRVYIPRASLERFYRTNTPLENAEEHITQVIGHSLPLRNEAFTGPESAGGEDETVIGWDMAIHAVAIPSTIPGNAYEELAIDEEAVAKEQSISTKPPYKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure function analysis of soluble inhibitors of cholix toxin from Vibrio cholerae
rcsb
molecule tags Transferase,toxin
source organism Vibrio cholerae
molecule keywords Cholix toxin
total genus 54
structure length 199
sequence length 206
ec nomenclature ec 2.4.2.36: NAD(+)--diphthamide ADP-ribosyltransferase.
pdb deposition date 2009-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09009 Exotox-A_cataly Exotoxin A catalytic
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.175.10 Alpha Beta Alpha-Beta Complex Diphtheria Toxin; domain 1 Diphtheria Toxin, domain 1 3ki5A00
3KI6A 1MDTA 2Q5TA 2ZITB 1TOXA 1DMAA 1ZM9B 1F0LA 1ZM4B 1IKPA 3ESSA 3B8HB 3B78B 1SGKA 3KI1A 1DTPA 5I82A 4OW6A 3KI4A 3KI7A 4AE1A 3KI5A 1IKQA 1ZM2B 3KI0A 1ZM3B 3NY6A 2Q6MA 3KI2A 3KI3A 1XK9A 3B82B 1DDTA 3Q9OA 4AE0A 1AERA 1XDTT
chains in the Genus database with same CATH superfamily
3KI6A 1MDTA 2Q5TA 2ZITB 1TOXA 1DMAA 1ZM9B 1F0LA 1ZM4B 1IKPA 3ESSA 3B8HB 3B78B 1SGKA 3KI1A 1DTPA 5I82A 4OW6A 3KI4A 3KI7A 4AE1A 3KI5A 1IKQA 1ZM2B 3KI0A 1ZM3B 3NY6A 2Q6MA 3KI2A 3KI3A 1XK9A 3B82B 1DDTA 3Q9OA 4AE0A 1AERA 1XDTT
chains in the Genus database with same CATH topology
3KI6A 1MDTA 2Q5TA 2ZITB 1TOXA 1DMAA 1ZM9B 1F0LA 1ZM4B 1IKPA 3ESSA 3B8HB 3B78B 1SGKA 3KI1A 1DTPA 5I82A 4OW6A 3KI4A 3KI7A 4AE1A 3KI5A 1IKQA 1ZM2B 3KI0A 1ZM3B 3NY6A 2Q6MA 3KI2A 3KI3A 1XK9A 3B82B 1DDTA 3Q9OA 4AE0A 1AERA 1XDTT
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KI6 A;  1MDT A;  2Q5T A;  2ZIT B;  1TOX A;  1DMA A;  1ZM9 B;  1F0L A;  1ZM4 B;  1IKP A;  3ESS A;  3B8H B;  3B78 B;  1SGK A;  3KI1 A;  1DTP A;  5I82 A;  4OW6 A;  3KI4 A;  3KI7 A;  4AE1 A;  3KI5 A;  1IKQ A;  1ZM2 B;  3KI0 A;  1ZM3 B;  3NY6 A;  2Q6M A;  3KI2 A;  3KI3 A;  1XK9 A;  3B82 B;  1DDT A;  3Q9O A;  4AE0 A;  1AER A;  1XDT T; 
#chains in the Genus database with same CATH topology
 3KI6 A;  1MDT A;  2Q5T A;  2ZIT B;  1TOX A;  1DMA A;  1ZM9 B;  1F0L A;  1ZM4 B;  1IKP A;  3ESS A;  3B8H B;  3B78 B;  1SGK A;  3KI1 A;  1DTP A;  5I82 A;  4OW6 A;  3KI4 A;  3KI7 A;  4AE1 A;  3KI5 A;  1IKQ A;  1ZM2 B;  3KI0 A;  1ZM3 B;  3NY6 A;  2Q6M A;  3KI2 A;  3KI3 A;  1XK9 A;  3B82 B;  1DDT A;  3Q9O A;  4AE0 A;  1AER A;  1XDT T; 
#chains in the Genus database with same CATH homology
 3KI6 A;  1MDT A;  2Q5T A;  2ZIT B;  1TOX A;  1DMA A;  1ZM9 B;  1F0L A;  1ZM4 B;  1IKP A;  3ESS A;  3B8H B;  3B78 B;  1SGK A;  3KI1 A;  1DTP A;  5I82 A;  4OW6 A;  3KI4 A;  3KI7 A;  4AE1 A;  3KI5 A;  1IKQ A;  1ZM2 B;  3KI0 A;  1ZM3 B;  3NY6 A;  2Q6M A;  3KI2 A;  3KI3 A;  1XK9 A;  3B82 B;  1DDT A;  3Q9O A;  4AE0 A;  1AER A;  1XDT T; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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