3KUSA

Crystal structure of the mlle domain of poly(a)-binding protein in complex with the binding region of paip2
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
82
structure length
82
Chain Sequence
LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Molecular Determinants of PAM2 Recognition by the MLLE Domain of Poly(A)-Binding Protein.
pubmed doi rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Polyadenylate-binding protein 1
total genus 28
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00658 PABP Poly-adenylate binding protein, unique domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1900.10 Mainly Alpha Orthogonal Bundle c-terminal domain of poly(a) binding protein c-terminal domain of poly(a) binding protein 3kusA01
2X04A 3PTHA 1I2TA 2O4TA 2HH6A 1IFWA 1G9LA 1JH4A 3KUIA 3KTRA 3KUTA 1JGNA 3KTPA 2RQHB 3PKNA 3KURA 3NTWA 2DYDA 3KUJA 2RQGB 3KUSA 4IVEA 1NMRA 2O3LA
chains in the Genus database with same CATH superfamily
2LKLA 2X04A 1GYZA 3PTHA 1I2TA 2O4TA 2HH6A 1IFWA 1G9LA 1JH4A 3KUIA 3KTRA 3KUTA 1JGNA 3KTPA 2RQHB 3PKNA 3KURA 3NTWA 2DYDA 2GHJA 3KUJA 2RQGB 3KUSA 4IVEA 4KXFB 3M92A 1NMRA 2O3LA
chains in the Genus database with same CATH topology
2LKLA 2X04A 3PTHA 1I2TA 2O4TA 2HH6A 1IFWA 1G9LA 1JH4A 3KUIA 3KTRA 3KUTA 1JGNA 3KTPA 2RQHB 3PKNA 3KURA 3NTWA 2DYDA 3KUJA 2RQGB 3KUSA 4IVEA 4KXFB 3M92A 1NMRA 2O3LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X04 A;  3PTH A;  1I2T A;  2O4T A;  2HH6 A;  1IFW A;  1G9L A;  1JH4 A;  3KUI A;  3KTR A;  3KUT A;  1JGN A;  3KTP A;  2RQH B;  3PKN A;  3KUR A;  3NTW A;  2DYD A;  3KUJ A;  2RQG B;  3KUS A;  4IVE A;  1NMR A;  2O3L A; 
#chains in the Genus database with same CATH topology
 2LKL A;  2X04 A;  1GYZ A;  3PTH A;  1I2T A;  2O4T A;  2HH6 A;  1IFW A;  1G9L A;  1JH4 A;  3KUI A;  3KTR A;  3KUT A;  1JGN A;  3KTP A;  2RQH B;  3PKN A;  3KUR A;  3NTW A;  2DYD A;  2GHJ A;  3KUJ A;  2RQG B;  3KUS A;  4IVE A;  4KXF B;  3M92 A;  1NMR A;  2O3L A; 
#chains in the Genus database with same CATH homology
 2LKL A;  2X04 A;  3PTH A;  1I2T A;  2O4T A;  2HH6 A;  1IFW A;  1G9L A;  1JH4 A;  3KUI A;  3KTR A;  3KUT A;  1JGN A;  3KTP A;  2RQH B;  3PKN A;  3KUR A;  3NTW A;  2DYD A;  3KUJ A;  2RQG B;  3KUS A;  4IVE A;  4KXF B;  3M92 A;  1NMR A;  2O3L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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