3KUT | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	84
structure length	84
Chain Sequence	SPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Protein binding
source organism	Homo sapiens
publication title	Molecular Determinants of PAM2 Recognition by the MLLE Domain of Poly(A)-Binding Protein. pubmed doi rcsb
molecule keywords	Polyadenylate-binding protein 1
total genus	28
structure length	84
sequence length	84
chains with identical sequence	B
ec nomenclature
pdb deposition date	2009-11-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00658	PABP	Poly-adenylate binding protein, unique domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1900.10	Mainly Alpha	Orthogonal Bundle	c-terminal domain of poly(a) binding protein	c-terminal domain of poly(a) binding protein	3kutA01

3KTPA 2O3LA 3PTHA 4IVEA 2X04A 2DYDA 3KTRA 1I2TA 2RQGB 3PKNA 1IFWA 3KUIA 1G9LA 2RQHB 1NMRA 1JH4A 3KUTA 3KURA 3NTWA 1JGNA 2O4TA 2HH6A 3KUJA 3KUSA
chains in the Genus database with same CATH superfamily

3KTPA 2O3LA 3PTHA 4IVEA 2X04A 3M92A 2DYDA 3KTRA 1I2TA 2RQGB 3PKNA 2GHJA 1IFWA 3KUIA 1G9LA 2RQHB 1NMRA 1JH4A 3KUTA 3KURA 3NTWA 1JGNA 2O4TA 1GYZA 4KXFB 2HH6A 2LKLA 3KUJA 3KUSA
chains in the Genus database with same CATH topology

3KTPA 2O3LA 3PTHA 4IVEA 2X04A 3M92A 2DYDA 3KTRA 1I2TA 2RQGB 3PKNA 1IFWA 3KUIA 1G9LA 2RQHB 1NMRA 1JH4A 3KUTA 3KURA 3NTWA 1JGNA 2O4TA 4KXFB 2HH6A 2LKLA 3KUJA 3KUSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3KTP A;  2O3L A;  3PTH A;  4IVE A;  2X04 A;  2DYD A;  3KTR A;  1I2T A;  2RQG B;  3PKN A;  1IFW A;  3KUI A;  1G9L A;  2RQH B;  1NMR A;  1JH4 A;  3KUT A;  3KUR A;  3NTW A;  1JGN A;  2O4T A;  2HH6 A;  3KUJ A;  3KUS A; 
#chains in the Genus database with same CATH topology
 3KTP A;  2O3L A;  3PTH A;  4IVE A;  2X04 A;  3M92 A;  2DYD A;  3KTR A;  1I2T A;  2RQG B;  3PKN A;  2GHJ A;  1IFW A;  3KUI A;  1G9L A;  2RQH B;  1NMR A;  1JH4 A;  3KUT A;  3KUR A;  3NTW A;  1JGN A;  2O4T A;  1GYZ A;  4KXF B;  2HH6 A;  2LKL A;  3KUJ A;  3KUS A; 
#chains in the Genus database with same CATH homology
 3KTP A;  2O3L A;  3PTH A;  4IVE A;  2X04 A;  3M92 A;  2DYD A;  3KTR A;  1I2T A;  2RQG B;  3PKN A;  1IFW A;  3KUI A;  1G9L A;  2RQH B;  1NMR A;  1JH4 A;  3KUT A;  3KUR A;  3NTW A;  1JGN A;  2O4T A;  4KXF B;  2HH6 A;  2LKL A;  3KUJ A;  3KUS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3KUTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations