3L74I

Cytochrome bc1 complex from chicken with famoxadone bound
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
XXXXXXXXXXXXXXXRPLLCRESMSGRSARRDLVAGISLNAPASVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other "DISTAL" Qo inhibitors.
rcsb
molecule tags Oxidoreductase
molecule keywords MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE
total genus 1
structure length 46
sequence length 46
chains with identical sequence V
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2009-12-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex; Chain I Cytochrome Bc1 Complex; Chain I 3l74I00
1PP9I 1NU1I 2A06I 3H1KI 1PPJI 1SQVI 3L72I 3L74I 3L73I 1NTZI 3L75I 1SQXI 4U3FI 3L71I 1L0NI 1L0LI 2FYUI 3H1LI 3H1HI 1SQBI 3H1JI 1SQPI 1SQQI 1NTKI 3L70I 3CWBI 3H1II 3TGUI 1NTMI
chains in the Genus database with same CATH superfamily
1PP9I 1NU1I 2A06I 3H1KI 1PPJI 1SQVI 3L72I 3L74I 3L73I 1NTZI 3L75I 1SQXI 4U3FI 3L71I 1L0NI 1L0LI 2FYUI 3H1LI 3H1HI 1SQBI 3H1JI 1SQPI 1SQQI 1NTKI 3L70I 3CWBI 3H1II 3TGUI 1NTMI
chains in the Genus database with same CATH topology
1PP9I 1NU1I 2A06I 3H1KI 1PPJI 1SQVI 3L72I 3L74I 3L73I 1NTZI 3L75I 1SQXI 4U3FI 3L71I 1L0NI 1L0LI 2FYUI 3H1LI 3H1HI 1SQBI 3H1JI 1SQPI 1SQQI 1NTKI 3L70I 3CWBI 3H1II 3TGUI 1NTMI
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1PP9 I;  1NU1 I;  2A06 I;  3H1K I;  1PPJ I;  1SQV I;  3L72 I;  3L74 I;  3L73 I;  1NTZ I;  3L75 I;  1SQX I;  4U3F I;  3L71 I;  1L0N I;  1L0L I;  2FYU I;  3H1L I;  3H1H I;  1SQB I;  3H1J I;  1SQP I;  1SQQ I;  1NTK I;  3L70 I;  3CWB I;  3H1I I;  3TGU I;  1NTM I; 
#chains in the Genus database with same CATH topology
 1PP9 I;  1NU1 I;  2A06 I;  3H1K I;  1PPJ I;  1SQV I;  3L72 I;  3L74 I;  3L73 I;  1NTZ I;  3L75 I;  1SQX I;  4U3F I;  3L71 I;  1L0N I;  1L0L I;  2FYU I;  3H1L I;  3H1H I;  1SQB I;  3H1J I;  1SQP I;  1SQQ I;  1NTK I;  3L70 I;  3CWB I;  3H1I I;  3TGU I;  1NTM I; 
#chains in the Genus database with same CATH homology
 1PP9 I;  1NU1 I;  2A06 I;  3H1K I;  1PPJ I;  1SQV I;  3L72 I;  3L74 I;  3L73 I;  1NTZ I;  3L75 I;  1SQX I;  4U3F I;  3L71 I;  1L0N I;  1L0L I;  2FYU I;  3H1L I;  3H1H I;  1SQB I;  3H1J I;  1SQP I;  1SQQ I;  1NTK I;  3L70 I;  3CWB I;  3H1I I;  3TGU I;  1NTM I;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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