3REM | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	97
structure length	97
Chain Sequence	KTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYWRQTR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 97 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	pH Dependence of Catalysis by Pseudomonas aeruginosa Isochorismate-Pyruvate Lyase: Implications for Transition State Stabilization and the Role of Lysine 42. pubmed doi rcsb
molecule keywords	Salicylate biosynthesis protein pchB
molecule tags	Lyase
source organism	Pseudomonas aeruginosa
total genus	36
structure length	97
sequence length	97
chains with identical sequence	B
ec nomenclature	ec 4.2.99.21: Isochorismate lyase.
pdb deposition date	2011-04-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01817	CM_2	Chorismate mutase type II

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.59.10	Mainly Alpha	Up-down Bundle	Chorismate Mutase Domain, subunit A	Chorismate mutase	3remA00

2H9CA 2H9DA 1ECMA 2QBVA 5CKXC 3RETA 3RMIA 2W19C 3NVTA 2D8DA 3TFCA 1YBZA 3HGXA 3HGWA 3REMA 2GTVX 2D8EA 2VKLA 2W1AC
chains in the Genus database with same CATH superfamily

2H9CA 2H9DA 1ECMA 2QBVA 5CKXC 3RETA 2E89A 3RMIA 1NI5A 2W19C 3NVTA 1WY5A 2D8DA 3TFCA 3A2KA 1YBZA 3HGXA 3HGWA 3REMA 2GTVX 2D8EA 2E21A 2VKLA 2W1AC
chains in the Genus database with same CATH topology

2H9CA 2H9DA 1ECMA 2QBVA 5CKXC 3RETA 3RMIA 2W19C 3NVTA 2D8DA 3TFCA 1YBZA 3HGXA 3HGWA 3REMA 2GTVX 2D8EA 2VKLA 2W1AC
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2H9C A;  2H9D A;  1ECM A;  2QBV A;  5CKX C;  3RET A;  3RMI A;  2W19 C;  3NVT A;  2D8D A;  3TFC A;  1YBZ A;  3HGX A;  3HGW A;  3REM A;  2GTV X;  2D8E A;  2VKL A;  2W1A C; 
#chains in the Genus database with same CATH topology
 2H9C A;  2H9D A;  1ECM A;  2QBV A;  5CKX C;  3RET A;  2E89 A;  3RMI A;  1NI5 A;  2W19 C;  3NVT A;  1WY5 A;  2D8D A;  3TFC A;  3A2K A;  1YBZ A;  3HGX A;  3HGW A;  3REM A;  2GTV X;  2D8E A;  2E21 A;  2VKL A;  2W1A C; 
#chains in the Genus database with same CATH homology
 2H9C A;  2H9D A;  1ECM A;  2QBV A;  5CKX C;  3RET A;  3RMI A;  2W19 C;  3NVT A;  2D8D A;  3TFC A;  1YBZ A;  3HGX A;  3HGW A;  3REM A;  2GTV X;  2D8E A;  2VKL A;  2W1A C;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3REMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations