3T6E | Genus

Total Genus 104

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	104
sequence length	273
structure length	273
Chain Sequence	ALLSFERKYRVRGGTLIGGDLFDFWVGPYFVGFFGVSAIFFIFLGVSLIGYAASQGPTWDPFAISINPPDLKYGLGAAPLLEGGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVFRPLLLGSWGHAFPYGILSHLDWVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGLHGGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALSIHRLGLFLASNIFLTGAFGTIASGPFWTRGWPEWWGWWLDIPFWS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	New insights into the structure of the reaction centre from Blastochloris viridis: evolution in the laboratory. pubmed doi rcsb
molecule keywords	Photosynthetic reaction center cytochrome c subunit
molecule tags	Electron transport
total genus	104
structure length	273
sequence length	273
ec nomenclature
pdb deposition date	2011-07-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
L	PF00124	Photo_RC	Photosynthetic reaction centre protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M; domain 1	Photosystem II protein D1-like	3t6eL01
1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M; domain 1	Photosystem II protein D1-like	3t6eL02

1RZZM 1JGZL 1RQKL 2HJ6L 5PRCL 1FNQL 2HITM 1DXRM 3D38L 3PRCL 3V3ZM 1RQKM 4N7LL 3DU3L 2HJ6M 2UXMM 1L9JL 1VRNL 1DV6M 3PRCM 1E14L 1JGYM 1YSTL 2BNPB 2JBLM 2X5VL 2UXJL 1PSTL 3DUQL 1M3XM 2X5UL 1L9BM 1L9JM 1VRNM 2GMRM 2J8DL 2RCRL 7PRCM 1R2CL 1RY5M 2UXKL 2PRCL 4IN7M 1AIGM 5LSEM 2I5NL 2HG3L 2X5VM 1JGWL 1JGXM 2UX3L 1PRCM 1KBYL 2UX5M 2BNSB 1RZZL 2UWTL 4IN5M 3DTSM 2JIYL 3I4DM 4HBHL 1DXRL 3V3ZL 2UWTM 1F6NM 1E6DL 2UWVM 2JIYM 2UXML 2UXLM 1AIJM 1DV6L 4HBHM 1MPSL 2WX5L 1JGYL 4CASC 2JBLL 1E6DM 4CASB 1RZHL 1M3XL 1YF6M 1L9BL 1PSSM 2GMRL 7PRCL 1MPSM 1RVJL 1RY5L 2BNPA 2WX5M 4IN7L 1AIGL 5LSEL 2BOZL 1DV3M 1JGXL 1PRCL 1RZHM 4H99M 2JJ0L 1OGVL 2UX5L 1RVJM 3DTAM 2UWWM 4IN5L 2BOZM 3DTSL 4N7KM 2JJ0M 3I4DL 2BNSA 1OGVM 1QOVM 1F6NL 4IN6M 3DSYL 3DU2M 2UWVL 3T6EM 2UWUM 2UXLL 1AIJL 1RG5M 2J8CM 3DSYM 4H9LM 1YF6L 1DS8M 1K6NM 1PSSL 6PRCL 4RCRM 1K6LM 3ZUML 1DV3L 1PCRM 4H99L 1UMXL 3DTAL 6PRCM 2UWWL 2HH1L 2WJNM 4TQQL 2WJML 3ZUMM 4N7KL 3WMMM 3T6DL 1UMXM 1S00M 1FNPM 1QOVL 2HH1M 4HBJL 3DU2L 2WJMM 4IN6L 4LWYM 4TQQM 5LRIM 3T6EL 2UWUL 2UWSM 2UX4M 1RG5L 1RGNM 2HG9M 3G7FL 2J8CL 4H9LL 4HBJM 2GNUM 3T6DM 1DS8L 1K6NL 3DTRL 1JGZM 4RCRL 1K6LL 3G7FM 5PRCM 1JH0L 1FNQM 1PCRL 3V3YL 3DTRM 3D38M 4N7LM 3DU3M 2WJNL 3ZUWL 3WMML 1JH0M 3V3YM 2HHKL 1S00L 1E14M 1EYSL 1FNPL 1YSTM 2UXJM 1PSTM 3ZUWM 4LWYL 5LRIL 3DUQM 2X5UM 2UWSL 2RCRM 2UX4L 2J8DM 2HHKM 1R2CM 2UXKM 1EYSM 2PRCM 1RGNL 2HG9L 2I5NM 2HG3M 1JGWM 2UX3M 2GNUL 2HITL 1KBYM
chains in the Genus database with same CATH superfamily

1RZZM 1JGZL 1RQKL 2HJ6L 5PRCL 1FNQL 2HITM 1DXRM 3D38L 3PRCL 3V3ZM 1RQKM 4N7LL 3DU3L 2HJ6M 2UXMM 1L9JL 1VRNL 1DV6M 3PRCM 1E14L 1JGYM 1YSTL 2BNPB 2JBLM 2X5VL 2UXJL 1PSTL 3DUQL 1M3XM 2X5UL 1L9BM 1L9JM 1VRNM 2GMRM 2J8DL 2RCRL 3VKWA 7PRCM 1R2CL 1RY5M 2UXKL 2PRCL 4IN7M 1AIGM 5LSEM 2I5NL 2HG3L 2X5VM 1JGWL 1JGXM 2UX3L 1PRCM 1KBYL 2UX5M 2BNSB 1RZZL 2UWTL 4IN5M 3DTSM 2JIYL 3I4DM 4HBHL 1DXRL 3V3ZL 2UWTM 1F6NM 1E6DL 2UWVM 2JIYM 2UXML 2UXLM 1AIJM 1DV6L 4HBHM 1MPSL 2WX5L 1JGYL 4CASC 2JBLL 1E6DM 4CASB 1RZHL 1M3XL 1YF6M 1L9BL 1PSSM 2GMRL 7PRCL 1MPSM 1RVJL 1RY5L 2BNPA 2WX5M 4IN7L 1AIGL 5LSEL 2BOZL 1DV3M 1JGXL 1PRCL 1RZHM 4H99M 2JJ0L 1OGVL 2UX5L 1RVJM 3DTAM 2UWWM 4IN5L 2BOZM 3DTSL 4N7KM 2JJ0M 3I4DL 2BNSA 1OGVM 1QOVM 1F6NL 4IN6M 3DSYL 3DU2M 2UWVL 3T6EM 2UWUM 2UXLL 1AIJL 1RG5M 2J8CM 3DSYM 4H9LM 1YF6L 1DS8M 1K6NM 1PSSL 6PRCL 4RCRM 1K6LM 3ZUML 1DV3L 1PCRM 4H99L 1UMXL 3DTAL 6PRCM 2UWWL 2HH1L 2WJNM 4TQQL 2WJML 3ZUMM 4N7KL 3WMMM 3T6DL 1UMXM 1S00M 1FNPM 1QOVL 2HH1M 4HBJL 3DU2L 2WJMM 4IN6L 4LWYM 4TQQM 5LRIM 3T6EL 2UWUL 2UWSM 2UX4M 1RG5L 1RGNM 2HG9M 3G7FL 2J8CL 4H9LL 4HBJM 2GNUM 3T6DM 1DS8L 1K6NL 3DTRL 1JGZM 3WRXC 4RCRL 1K6LL 3G7FM 5PRCM 1JH0L 1FNQM 1PCRL 3V3YL 3DTRM 3D38M 4N7LM 3DU3M 2WJNL 3ZUWL 3WMML 1JH0M 3V3YM 2HHKL 1S00L 3WRYC 1E14M 1EYSL 1FNPL 1YSTM 2UXJM 1PSTM 3ZUWM 4LWYL 5LRIL 3DUQM 2X5UM 2UWSL 2RCRM 2UX4L 2J8DM 2HHKM 1R2CM 2UXKM 1EYSM 2PRCM 1RGNL 2HG9L 2I5NM 2HG3M 1JGWM 2UX3M 2GNUL 2HITL 1KBYM
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1RZZ M;  1JGZ L;  1RQK L;  2HJ6 L;  5PRC L;  1FNQ L;  2HIT M;  1DXR M;  3D38 L;  3PRC L;  3V3Z M;  1RQK M;  4N7L L;  3DU3 L;  2HJ6 M;  2UXM M;  1L9J L;  1VRN L;  1DV6 M;  3PRC M;  1E14 L;  1JGY M;  1YST L;  2BNP B;  2JBL M;  2X5V L;  2UXJ L;  1PST L;  3DUQ L;  1M3X M;  2X5U L;  1L9B M;  1L9J M;  1VRN M;  2GMR M;  2J8D L;  2RCR L;  7PRC M;  1R2C L;  1RY5 M;  2UXK L;  2PRC L;  4IN7 M;  1AIG M;  5LSE M;  2I5N L;  2HG3 L;  2X5V M;  1JGW L;  1JGX M;  2UX3 L;  1PRC M;  1KBY L;  2UX5 M;  2BNS B;  1RZZ L;  2UWT L;  4IN5 M;  3DTS M;  2JIY L;  3I4D M;  4HBH L;  1DXR L;  3V3Z L;  2UWT M;  1F6N M;  1E6D L;  2UWV M;  2JIY M;  2UXM L;  2UXL M;  1AIJ M;  1DV6 L;  4HBH M;  1MPS L;  2WX5 L;  1JGY L;  4CAS C;  2JBL L;  1E6D M;  4CAS B;  1RZH L;  1M3X L;  1YF6 M;  1L9B L;  1PSS M;  2GMR L;  7PRC L;  1MPS M;  1RVJ L;  1RY5 L;  2BNP A;  2WX5 M;  4IN7 L;  1AIG L;  5LSE L;  2BOZ L;  1DV3 M;  1JGX L;  1PRC L;  1RZH M;  4H99 M;  2JJ0 L;  1OGV L;  2UX5 L;  1RVJ M;  3DTA M;  2UWW M;  4IN5 L;  2BOZ M;  3DTS L;  4N7K M;  2JJ0 M;  3I4D L;  2BNS A;  1OGV M;  1QOV M;  1F6N L;  4IN6 M;  3DSY L;  3DU2 M;  2UWV L;  3T6E M;  2UWU M;  2UXL L;  1AIJ L;  1RG5 M;  2J8C M;  3DSY M;  4H9L M;  1YF6 L;  1DS8 M;  1K6N M;  1PSS L;  6PRC L;  4RCR M;  1K6L M;  3ZUM L;  1DV3 L;  1PCR M;  4H99 L;  1UMX L;  3DTA L;  6PRC M;  2UWW L;  2HH1 L;  2WJN M;  4TQQ L;  2WJM L;  3ZUM M;  4N7K L;  3WMM M;  3T6D L;  1UMX M;  1S00 M;  1FNP M;  1QOV L;  2HH1 M;  4HBJ L;  3DU2 L;  2WJM M;  4IN6 L;  4LWY M;  4TQQ M;  5LRI M;  3T6E L;  2UWU L;  2UWS M;  2UX4 M;  1RG5 L;  1RGN M;  2HG9 M;  3G7F L;  2J8C L;  4H9L L;  4HBJ M;  2GNU M;  3T6D M;  1DS8 L;  1K6N L;  3DTR L;  1JGZ M;  4RCR L;  1K6L L;  3G7F M;  5PRC M;  1JH0 L;  1FNQ M;  1PCR L;  3V3Y L;  3DTR M;  3D38 M;  4N7L M;  3DU3 M;  2WJN L;  3ZUW L;  3WMM L;  1JH0 M;  3V3Y M;  2HHK L;  1S00 L;  1E14 M;  1EYS L;  1FNP L;  1YST M;  2UXJ M;  1PST M;  3ZUW M;  4LWY L;  5LRI L;  3DUQ M;  2X5U M;  2UWS L;  2RCR M;  2UX4 L;  2J8D M;  2HHK M;  1R2C M;  2UXK M;  1EYS M;  2PRC M;  1RGN L;  2HG9 L;  2I5N M;  2HG3 M;  1JGW M;  2UX3 M;  2GNU L;  2HIT L;  1KBY M; 
#chains in the Genus database with same CATH topology
 1RZZ M;  1JGZ L;  1RQK L;  2HJ6 L;  5PRC L;  1FNQ L;  2HIT M;  1DXR M;  3D38 L;  3PRC L;  3V3Z M;  1RQK M;  4N7L L;  3DU3 L;  2HJ6 M;  2UXM M;  1L9J L;  1VRN L;  1DV6 M;  3PRC M;  1E14 L;  1JGY M;  1YST L;  2BNP B;  2JBL M;  2X5V L;  2UXJ L;  1PST L;  3DUQ L;  1M3X M;  2X5U L;  1L9B M;  1L9J M;  1VRN M;  2GMR M;  2J8D L;  2RCR L;  3VKW A;  7PRC M;  1R2C L;  1RY5 M;  2UXK L;  2PRC L;  4IN7 M;  1AIG M;  5LSE M;  2I5N L;  2HG3 L;  2X5V M;  1JGW L;  1JGX M;  2UX3 L;  1PRC M;  1KBY L;  2UX5 M;  2BNS B;  1RZZ L;  2UWT L;  4IN5 M;  3DTS M;  2JIY L;  3I4D M;  4HBH L;  1DXR L;  3V3Z L;  2UWT M;  1F6N M;  1E6D L;  2UWV M;  2JIY M;  2UXM L;  2UXL M;  1AIJ M;  1DV6 L;  4HBH M;  1MPS L;  2WX5 L;  1JGY L;  4CAS C;  2JBL L;  1E6D M;  4CAS B;  1RZH L;  1M3X L;  1YF6 M;  1L9B L;  1PSS M;  2GMR L;  7PRC L;  1MPS M;  1RVJ L;  1RY5 L;  2BNP A;  2WX5 M;  4IN7 L;  1AIG L;  5LSE L;  2BOZ L;  1DV3 M;  1JGX L;  1PRC L;  1RZH M;  4H99 M;  2JJ0 L;  1OGV L;  2UX5 L;  1RVJ M;  3DTA M;  2UWW M;  4IN5 L;  2BOZ M;  3DTS L;  4N7K M;  2JJ0 M;  3I4D L;  2BNS A;  1OGV M;  1QOV M;  1F6N L;  4IN6 M;  3DSY L;  3DU2 M;  2UWV L;  3T6E M;  2UWU M;  2UXL L;  1AIJ L;  1RG5 M;  2J8C M;  3DSY M;  4H9L M;  1YF6 L;  1DS8 M;  1K6N M;  1PSS L;  6PRC L;  4RCR M;  1K6L M;  3ZUM L;  1DV3 L;  1PCR M;  4H99 L;  1UMX L;  3DTA L;  6PRC M;  2UWW L;  2HH1 L;  2WJN M;  4TQQ L;  2WJM L;  3ZUM M;  4N7K L;  3WMM M;  3T6D L;  1UMX M;  1S00 M;  1FNP M;  1QOV L;  2HH1 M;  4HBJ L;  3DU2 L;  2WJM M;  4IN6 L;  4LWY M;  4TQQ M;  5LRI M;  3T6E L;  2UWU L;  2UWS M;  2UX4 M;  1RG5 L;  1RGN M;  2HG9 M;  3G7F L;  2J8C L;  4H9L L;  4HBJ M;  2GNU M;  3T6D M;  1DS8 L;  1K6N L;  3DTR L;  1JGZ M;  3WRX C;  4RCR L;  1K6L L;  3G7F M;  5PRC M;  1JH0 L;  1FNQ M;  1PCR L;  3V3Y L;  3DTR M;  3D38 M;  4N7L M;  3DU3 M;  2WJN L;  3ZUW L;  3WMM L;  1JH0 M;  3V3Y M;  2HHK L;  1S00 L;  3WRY C;  1E14 M;  1EYS L;  1FNP L;  1YST M;  2UXJ M;  1PST M;  3ZUW M;  4LWY L;  5LRI L;  3DUQ M;  2X5U M;  2UWS L;  2RCR M;  2UX4 L;  2J8D M;  2HHK M;  1R2C M;  2UXK M;  1EYS M;  2PRC M;  1RGN L;  2HG9 L;  2I5N M;  2HG3 M;  1JGW M;  2UX3 M;  2GNU L;  2HIT L;  1KBY M; 
#chains in the Genus database with same CATH homology
 1RZZ M;  1JGZ L;  1RQK L;  2HJ6 L;  5PRC L;  1FNQ L;  2HIT M;  1DXR M;  3D38 L;  3PRC L;  3V3Z M;  1RQK M;  4N7L L;  3DU3 L;  2HJ6 M;  2UXM M;  1L9J L;  1VRN L;  1DV6 M;  3PRC M;  1E14 L;  1JGY M;  1YST L;  2BNP B;  2JBL M;  2X5V L;  2UXJ L;  1PST L;  3DUQ L;  1M3X M;  2X5U L;  1L9B M;  1L9J M;  1VRN M;  2GMR M;  2J8D L;  2RCR L;  7PRC M;  1R2C L;  1RY5 M;  2UXK L;  2PRC L;  4IN7 M;  1AIG M;  5LSE M;  2I5N L;  2HG3 L;  2X5V M;  1JGW L;  1JGX M;  2UX3 L;  1PRC M;  1KBY L;  2UX5 M;  2BNS B;  1RZZ L;  2UWT L;  4IN5 M;  3DTS M;  2JIY L;  3I4D M;  4HBH L;  1DXR L;  3V3Z L;  2UWT M;  1F6N M;  1E6D L;  2UWV M;  2JIY M;  2UXM L;  2UXL M;  1AIJ M;  1DV6 L;  4HBH M;  1MPS L;  2WX5 L;  1JGY L;  4CAS C;  2JBL L;  1E6D M;  4CAS B;  1RZH L;  1M3X L;  1YF6 M;  1L9B L;  1PSS M;  2GMR L;  7PRC L;  1MPS M;  1RVJ L;  1RY5 L;  2BNP A;  2WX5 M;  4IN7 L;  1AIG L;  5LSE L;  2BOZ L;  1DV3 M;  1JGX L;  1PRC L;  1RZH M;  4H99 M;  2JJ0 L;  1OGV L;  2UX5 L;  1RVJ M;  3DTA M;  2UWW M;  4IN5 L;  2BOZ M;  3DTS L;  4N7K M;  2JJ0 M;  3I4D L;  2BNS A;  1OGV M;  1QOV M;  1F6N L;  4IN6 M;  3DSY L;  3DU2 M;  2UWV L;  3T6E M;  2UWU M;  2UXL L;  1AIJ L;  1RG5 M;  2J8C M;  3DSY M;  4H9L M;  1YF6 L;  1DS8 M;  1K6N M;  1PSS L;  6PRC L;  4RCR M;  1K6L M;  3ZUM L;  1DV3 L;  1PCR M;  4H99 L;  1UMX L;  3DTA L;  6PRC M;  2UWW L;  2HH1 L;  2WJN M;  4TQQ L;  2WJM L;  3ZUM M;  4N7K L;  3WMM M;  3T6D L;  1UMX M;  1S00 M;  1FNP M;  1QOV L;  2HH1 M;  4HBJ L;  3DU2 L;  2WJM M;  4IN6 L;  4LWY M;  4TQQ M;  5LRI M;  3T6E L;  2UWU L;  2UWS M;  2UX4 M;  1RG5 L;  1RGN M;  2HG9 M;  3G7F L;  2J8C L;  4H9L L;  4HBJ M;  2GNU M;  3T6D M;  1DS8 L;  1K6N L;  3DTR L;  1JGZ M;  4RCR L;  1K6L L;  3G7F M;  5PRC M;  1JH0 L;  1FNQ M;  1PCR L;  3V3Y L;  3DTR M;  3D38 M;  4N7L M;  3DU3 M;  2WJN L;  3ZUW L;  3WMM L;  1JH0 M;  3V3Y M;  2HHK L;  1S00 L;  1E14 M;  1EYS L;  1FNP L;  1YST M;  2UXJ M;  1PST M;  3ZUW M;  4LWY L;  5LRI L;  3DUQ M;  2X5U M;  2UWS L;  2RCR M;  2UX4 L;  2J8D M;  2HHK M;  1R2C M;  2UXK M;  1EYS M;  2PRC M;  1RGN L;  2HG9 L;  2I5N M;  2HG3 M;  1JGW M;  2UX3 M;  2GNU L;  2HIT L;  1KBY M;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3T6EL

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations